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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15128-RA through 18771 annotations produced 1 hits



(CG15128):

Annotation Number : CG15128
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0034467
Gbrowse : chr2R:15573110-15575583 (-) // 100.0 //
Probeset : 1630601_at
Accessions : protein= NP_611441;, nucleotide= NM_137597;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0034467.
VDRC has 2 RNAi stocks for FBgn0034467 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.00Down
Head4 ± 20 of 4 0.00Down
Eye2 ± 10 of 4 0.02Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland3 ± 10 of 4 0.03Down
Crop3 ± 10 of 4 0.00Down
Midgut4 ± 20 of 4 0.00Down
Tubule5 ± 00 of 4 0.10Down
Hindgut3 ± 00 of 4 0.00Down
Heart3 ± 10 of 4 0.03Down
Fat body3 ± 30 of 4 0.03Down
Ovary1 ± 00 of 4 0.00Down
Testis1319 ± 64 of 412.00Up
Male accessory glands3 ± 00 of 4 0.00Down
Virgin spermatheca2 ± 00 of 4 0.02Down
Mated spermatheca3 ± 00 of 4 0.03Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS2 ± 10 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.02Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut0 ± 00 of 4 0.01Down
Larval fat body143 ± 804 of 4 1.30None
Larval trachea7 ± 81 of 4 0.06Down
Larval carcass3 ± 10 of 4 0.03Down
S2 cells (growing)3 ± 10 of 4 0.03Down
Whole fly110 ± 44 of 4

Looking for CG15128-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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