FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

Searching for CG15138-RA through 18771 annotations produced 2 hits

beat-IIIc (beat-IIIc):

Annotation Number : CG15138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032629
Gbrowse : chr2L:17189809-17260732 (-) // 100.0 //
Probeset : 1625349_at
Accessions : protein= NP_609830; /// NP_724042;, nucleotide= NM_135986; /// NM_165209;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0032629.
BDGP gene expression has embryonic in situ data for beat-IIIc: 52 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0032629 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032629 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	83 ± 9	4 of 4	13.70	Up
Head	31 ± 1	4 of 4	5.20	Up
Eye	15 ± 1	4 of 4	2.49	Up
Thoracicoabdominal ganglion	90 ± 5	4 of 4	14.80	Up
Salivary gland	17 ± 4	1 of 4	2.82	None
Crop	33 ± 0	4 of 4	5.50	Up
Midgut	8 ± 1	2 of 4	1.30	None
Tubule	3 ± 0	0 of 4	0.60	Down
Hindgut	8 ± 0	4 of 4	1.40	None
Heart	4 ± 1	1 of 4	0.68	None
Fat body	19 ± 11	3 of 4	3.23	None
Ovary	5 ± 1	3 of 4	0.80	None
Testis	17 ± 2	4 of 4	2.90	Up
Male accessory glands	6 ± 1	1 of 4	1.10	None
Virgin spermatheca	7 ± 1	4 of 4	1.30	None
Mated spermatheca	6 ± 1	2 of 4	1.14	None
Adult carcass	11 ± 2	2 of 4	1.80	None
Larval CNS	77 ± 6	4 of 4	12.68	Up
Larval Salivary gland	4 ± 1	0 of 4	0.75	None
Larval midgut	4 ± 0	0 of 4	0.68	None
Larval tubule	4 ± 1	0 of 4	0.70	None
Larval hindgut	9 ± 1	4 of 4	1.57	None
Larval fat body	10 ± 0	1 of 4	1.70	Up
Larval trachea	4 ± 2	0 of 4	0.74	None
Larval carcass	13 ± 1	4 of 4	2.25	Up
S2 cells (growing)	5 ± 0	2 of 4	0.83	None
Whole fly	6 ± 1	4 of 4

beat-IIIc (beat-IIIc):

Annotation Number : CG15138
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032629
Gbrowse : chr2L:17189829-17260732 (-) // 98.86 //
Probeset : 1633927_a_at
Accessions : protein= NP_609830; /// NP_724042;, nucleotide= NM_135986; /// NM_165209;
Pathway : 0005576 // extracellular region // non-traceable author statement
FlyMine data for FBgn0032629.
BDGP gene expression has embryonic in situ data for beat-IIIc: 52 pix of staining in 12 body parts.
TRiP has 1 RNAi stocks for FBgn0032629 available for purchase.
VDRC has 3 RNAi stocks for FBgn0032629 available for purchase.

Tissue	mRNA Signal	Present Call	Enrichment	Affy Call
Brain	255 ± 14	4 of 4	27.00	Up
Head	58 ± 3	4 of 4	6.20	Up
Eye	33 ± 1	4 of 4	3.52	Up
Thoracicoabdominal ganglion	283 ± 4	4 of 4	29.90	Up
Salivary gland	7 ± 1	0 of 4	0.77	None
Crop	48 ± 2	4 of 4	5.10	Up
Midgut	2 ± 0	0 of 4	0.30	Down
Tubule	0 ± 0	0 of 4	0.10	Down
Hindgut	4 ± 1	0 of 4	0.50	Down
Heart	4 ± 0	1 of 4	0.51	Down
Fat body	2 ± 1	0 of 4	0.24	Down
Ovary	4 ± 1	0 of 4	0.50	Down
Testis	58 ± 5	4 of 4	6.20	Up
Male accessory glands	13 ± 2	2 of 4	1.40	None
Virgin spermatheca	1 ± 0	0 of 4	0.11	Down
Mated spermatheca	1 ± 0	0 of 4	0.20	Down
Adult carcass	3 ± 1	0 of 4	0.40	Down
Larval CNS	138 ± 8	4 of 4	14.64	Up
Larval Salivary gland	1 ± 0	0 of 4	0.10	Down
Larval midgut	4 ± 1	0 of 4	0.45	Down
Larval tubule	1 ± 0	0 of 4	0.10	Down
Larval hindgut	5 ± 0	1 of 4	0.62	Down
Larval fat body	8 ± 2	0 of 4	0.90	None
Larval trachea	2 ± 1	0 of 4	0.31	Down
Larval carcass	7 ± 1	2 of 4	0.75	None
S2 cells (growing)	0 ± 0	0 of 4	0.04	Down
Whole fly	9 ± 0	3 of 4

Looking for CG15138-RA. 2 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720