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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15141-RA through 18771 annotations produced 1 hits



(CG15141):

Annotation Number : CG15141
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032635
Gbrowse : chr2L:17410656-17413505 (+) // 100.0 //
Probeset : 1625978_at
Accessions : protein= NP_609837;, nucleotide= NM_135993;
Interpro : 0004842 // ubiquitin-protein ligase activity // inferred from electronic annotation /// 0005515 // protein binding // in
FlyMine data for FBgn0032635.
BDGP gene expression has embryonic in situ data for CG15141: 36 pix of staining in 7 body parts.
BioGrid reports that CG15141 interacts with CG15631 CG17446 CG1830 CG3081 CG3851 CG4328 CG4863 CG5099 CG6707 CG7954 CG8189 CG8415 CG8435 CG8589 CG9277 .
VDRC has 2 RNAi stocks for FBgn0032635 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain242 84 of 4 1.20Up
Head120 104 of 4 0.60Down
Eye181 134 of 4 0.94None
Thoracicoabdominal ganglion202 64 of 4 1.00None
Salivary gland60 14 of 4 0.31Down
Crop51 24 of 4 0.30Down
Midgut60 34 of 4 0.30Down
Tubule86 114 of 4 0.40Down
Hindgut57 14 of 4 0.30Down
Heart77 24 of 4 0.40Down
Fat body67 24 of 4 0.35Down
Ovary464 24 of 4 2.40Up
Testis193 84 of 4 1.00None
Male accessory glands71 54 of 4 0.40Down
Virgin spermatheca57 34 of 4 0.29Down
Mated spermatheca55 14 of 4 0.28Down
Adult carcass58 64 of 4 0.30Down
Larval CNS434 224 of 4 2.24Up
Larval Salivary gland160 84 of 4 0.83Down
Larval midgut68 54 of 4 0.35Down
Larval tubule119 44 of 4 0.60Down
Larval hindgut84 74 of 4 0.43Down
Larval fat body115 204 of 4 0.60Down
Larval trachea165 214 of 4 0.85None
Larval carcass68 54 of 4 0.35Down
S2 cells (growing)210 14 of 4 1.08None
Whole fly194 64 of 4

Looking for CG15141-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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