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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15145-RA through 18771 annotations produced 2 hits



(CG15145):

Annotation Number : CG15145
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032649
Gbrowse : chr2L:17529466-17531395 (-) // 100.0 //
Probeset : 1630273_at
Accessions : protein= NP_609850;, nucleotide= NM_136006;
FlyMine data for FBgn0032649.
VDRC has 3 RNAi stocks for FBgn0032649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.20Down
Head4 ± 11 of 4 0.30Down
Eye4 ± 11 of 4 0.28Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.20Down
Salivary gland8 ± 20 of 4 0.55None
Crop3 ± 10 of 4 0.20Down
Midgut0 ± 00 of 4 0.00Down
Tubule2 ± 00 of 4 0.20Down
Hindgut3 ± 10 of 4 0.20Down
Heart1 ± 00 of 4 0.11Down
Fat body8 ± 33 of 4 0.57Down
Ovary1 ± 00 of 4 0.10Down
Testis284 ± 104 of 419.30Up
Male accessory glands7 ± 10 of 4 0.50Down
Virgin spermatheca5 ± 11 of 4 0.38Down
Mated spermatheca7 ± 12 of 4 0.50Down
Adult carcass5 ± 20 of 4 0.30Down
Larval CNS5 ± 21 of 4 0.35Down
Larval Salivary gland3 ± 10 of 4 0.24Down
Larval midgut1 ± 00 of 4 0.08Down
Larval tubule2 ± 10 of 4 0.20Down
Larval hindgut2 ± 00 of 4 0.14Down
Larval fat body46 ± 293 of 4 3.20None
Larval trachea3 ± 21 of 4 0.24Down
Larval carcass1 ± 00 of 4 0.10Down
S2 cells (growing)1 ± 00 of 4 0.10Down
Whole fly14 ± 14 of 4



(CG15145):

Annotation Number : Stencil:2L:17520937:17509516:GENSCAN
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032649
Gbrowse : chr2L:17531433-17542854 (-) // 100.0 //
Probeset : 1631956_at
Accessions : protein= NP_609850;, nucleotide= NM_136006;
FlyMine data for FBgn0032649.
VDRC has 3 RNAi stocks for FBgn0032649 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 10 of 4 0.90None
Head2 ± 00 of 4 0.50None
Eye1 ± 00 of 4 0.37Down
Thoracicoabdominal ganglion5 ± 10 of 4 1.00None
Salivary gland8 ± 40 of 4 1.66None
Crop5 ± 10 of 4 1.20None
Midgut8 ± 20 of 4 1.60None
Tubule3 ± 00 of 4 0.70Down
Hindgut5 ± 10 of 4 1.10None
Heart1 ± 00 of 4 0.34Down
Fat body9 ± 50 of 4 1.85None
Ovary2 ± 00 of 4 0.40None
Testis41 ± 44 of 4 8.10Up
Male accessory glands8 ± 30 of 4 1.60None
Virgin spermatheca4 ± 10 of 4 0.94None
Mated spermatheca8 ± 20 of 4 1.75None
Adult carcass7 ± 20 of 4 1.40None
Larval CNS3 ± 20 of 4 0.78None
Larval Salivary gland5 ± 10 of 4 1.04None
Larval midgut7 ± 00 of 4 1.53None
Larval tubule4 ± 10 of 4 0.90None
Larval hindgut4 ± 10 of 4 0.90None
Larval fat body16 ± 12 of 4 3.20Up
Larval trachea2 ± 10 of 4 0.57None
Larval carcass9 ± 10 of 4 1.83Up
S2 cells (growing)4 ± 00 of 4 0.97None
Whole fly5 ± 00 of 4

Looking for CG15145-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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