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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15153-RA through 18771 annotations produced 1 hits



(CG15153):

Annotation Number : CG15153
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032663
Gbrowse : chr2L:18090940-18092238 (-) // 100.0 //
Probeset : 1631097_at
Accessions : protein= NP_609863;, nucleotide= NM_136019;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032663.
BioGrid reports that CG15153 interacts with CG9304 CG8280 .
VDRC has 4 RNAi stocks for FBgn0032663 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 10 of 4 0.50None
Head6 ± 10 of 4 1.60None
Eye3 ± 10 of 4 0.78None
Thoracicoabdominal ganglion3 ± 10 of 4 0.90None
Salivary gland11 ± 20 of 4 2.68None
Crop5 ± 10 of 4 1.30None
Midgut30 ± 30 of 4 7.30Up
Tubule5 ± 00 of 4 1.30None
Hindgut3 ± 10 of 4 0.90None
Heart3 ± 10 of 4 0.76None
Fat body13 ± 60 of 4 3.29Up
Ovary1 ± 00 of 4 0.30None
Testis4 ± 10 of 4 1.00None
Male accessory glands10 ± 30 of 4 2.40None
Virgin spermatheca6 ± 20 of 4 1.50None
Mated spermatheca4 ± 10 of 4 0.95None
Adult carcass7 ± 10 of 4 1.70None
Larval CNS2 ± 00 of 4 0.52None
Larval Salivary gland8 ± 20 of 4 2.02None
Larval midgut169 ± 34 of 440.27Up
Larval tubule7 ± 20 of 4 1.80None
Larval hindgut7 ± 00 of 4 1.76None
Larval fat body5 ± 40 of 4 1.40None
Larval trachea3 ± 10 of 4 0.91None
Larval carcass6 ± 10 of 4 1.50None
S2 cells (growing)2 ± 00 of 4 0.57None
Whole fly4 ± 10 of 4

Looking for CG15153-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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