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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15159-RA through 18771 annotations produced 2 hits



Phosphodiesterase 11 (Pde11):

Annotation Number : CG10231
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0085370
Gbrowse : chr2L:18532727-18563172 (-) // 100.0 //
Probeset : 1639582_at
Accessions : protein= NP_001097177; /// NP_609885;, nucleotide= NM_001103707; /// NM_136041;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3'
FlyMine data for FBgn0085370.
Homophila reports that CG10231 is a close match (1e-18) to human gene PDE8B;PPNAD3 (NP_001025025), a gene associated with Pigmented nodular adrenocortical disease, primary, 3 (3).
BioGrid reports that CG10231 interacts with CG17666 CG17826 CG4804 CG6864 CG8942 .
TRiP has 1 RNAi stocks for FBgn0085370 available for purchase.
VDRC has 4 RNAi stocks for FBgn0085370 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain268 ± 94 of 4 2.50Up
Head132 ± 104 of 4 1.20None
Eye327 ± 374 of 4 3.09Up
Thoracicoabdominal ganglion154 ± 114 of 4 1.50Up
Salivary gland268 ± 14 of 4 2.53Up
Crop176 ± 74 of 4 1.70Up
Midgut188 ± 84 of 4 1.80Up
Tubule161 ± 74 of 4 1.50Up
Hindgut285 ± 114 of 4 2.70Up
Heart332 ± 134 of 4 3.14Up
Fat body98 ± 74 of 4 0.92None
Ovary192 ± 24 of 4 1.80Up
Testis39 ± 24 of 4 0.40Down
Male accessory glands77 ± 44 of 4 0.70None
Virgin spermatheca105 ± 104 of 4 0.99None
Mated spermatheca110 ± 74 of 4 1.04None
Adult carcass102 ± 84 of 4 1.00None
Larval CNS79 ± 24 of 4 0.75None
Larval Salivary gland176 ± 134 of 4 1.66Up
Larval midgut91 ± 84 of 4 0.86None
Larval tubule180 ± 74 of 4 1.70Up
Larval hindgut172 ± 94 of 4 1.63Up
Larval fat body73 ± 44 of 4 0.70None
Larval trachea156 ± 164 of 4 1.48Up
Larval carcass77 ± 94 of 4 0.73None
S2 cells (growing)245 ± 94 of 4 2.31Up
Whole fly106 ± 114 of 4



():

Annotation Number : CG15159
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:18543245-18544115 (-) // 100.0 //
Probeset : 1628926_at
Accessions : protein= NP_001097177; /// NP_609885;, nucleotide= NM_001103707; /// NM_136041;
Interpro : "0003824 // catalytic activity // inferred from electronic annotation /// 0004114 // 3'


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.60None
Head4 ± 10 of 4 1.30None
Eye2 ± 00 of 4 0.74None
Thoracicoabdominal ganglion2 ± 10 of 4 0.80None
Salivary gland2 ± 00 of 4 0.69None
Crop6 ± 00 of 4 2.00None
Midgut2 ± 00 of 4 0.80None
Tubule4 ± 00 of 4 1.20None
Hindgut6 ± 20 of 4 1.90None
Heart5 ± 10 of 4 1.59None
Fat body4 ± 20 of 4 1.22None
Ovary4 ± 02 of 4 1.40None
Testis2 ± 10 of 4 0.60None
Male accessory glands10 ± 30 of 4 2.90None
Virgin spermatheca2 ± 00 of 4 0.74None
Mated spermatheca2 ± 10 of 4 0.72None
Adult carcass1 ± 10 of 4 0.50None
Larval CNS2 ± 10 of 4 0.82None
Larval Salivary gland5 ± 10 of 4 1.69None
Larval midgut3 ± 10 of 4 1.10None
Larval tubule6 ± 10 of 4 1.90None
Larval hindgut3 ± 10 of 4 1.15None
Larval fat body10 ± 11 of 4 2.90Up
Larval trachea2 ± 20 of 4 0.87None
Larval carcass2 ± 10 of 4 0.82None
S2 cells (growing)7 ± 02 of 4 2.09Up
Whole fly3 ± 10 of 4

Looking for CG15159-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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