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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15161-RA through 18771 annotations produced 1 hits


Annotation Number : CG15161
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032692
Gbrowse : chr2L:18614338-18616067 (-) // 100.0 //
Probeset : 1632286_at
Accessions : protein= NP_609890;, nucleotide= NM_136046;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0032692.
BDGP gene expression has embryonic in situ data for CG15161: 15 pix of staining in 18 body parts.
BioGrid reports that CG15161 interacts with CG3929 .
VDRC has 2 RNAi stocks for FBgn0032692 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 10 of 4 0.90None
Head13 11 of 4 4.00Up
Eye7 12 of 4 2.13None
Thoracicoabdominal ganglion6 20 of 4 1.90None
Salivary gland8 10 of 4 2.47None
Crop4 10 of 4 1.40None
Midgut2 00 of 4 0.70None
Tubule2 00 of 4 0.80None
Hindgut2 00 of 4 0.60None
Heart3 10 of 4 1.14None
Fat body7 30 of 4 2.32None
Ovary2 00 of 4 0.80None
Testis3 00 of 4 0.90None
Male accessory glands19 21 of 4 5.80Up
Virgin spermatheca4 10 of 4 1.47None
Mated spermatheca8 30 of 4 2.58None
Adult carcass21 52 of 4 6.50Up
Larval CNS5 20 of 4 1.68None
Larval Salivary gland5 00 of 4 1.77None
Larval midgut4 10 of 4 1.40None
Larval tubule2 00 of 4 0.80None
Larval hindgut2 10 of 4 0.62None
Larval fat body9 10 of 4 2.90Up
Larval trachea3 31 of 4 1.08None
Larval carcass3 10 of 4 1.02None
S2 cells (growing)10 20 of 4 3.29Up
Whole fly3 10 of 4

Looking for CG15161-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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