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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15170-RA through 18771 annotations produced 1 hits



(CG15170):

Annotation Number : CG15170
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0032733
Gbrowse : chr2L:18988293-18990227 (-) // 100.0 //
Probeset : 1632444_at
Accessions : protein= NP_609927;, nucleotide= NM_136083;
FlyMine data for FBgn0032733.
BioGrid reports that CG15170 interacts with CG15781 CG9653 .
VDRC has 2 RNAi stocks for FBgn0032733 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head6 00 of 4 0.40Down
Eye2 10 of 4 0.19Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland4 20 of 4 0.27Down
Crop3 10 of 4 0.20Down
Midgut248 104 of 415.70Up
Tubule2 00 of 4 0.20Down
Hindgut0 00 of 4 0.10Down
Heart0 00 of 4 0.04Down
Fat body2 10 of 4 0.13Down
Ovary1 00 of 4 0.10Down
Testis0 00 of 4 0.00Down
Male accessory glands3 10 of 4 0.20Down
Virgin spermatheca2 00 of 4 0.18Down
Mated spermatheca1 00 of 4 0.08Down
Adult carcass5 30 of 4 0.30Down
Larval CNS0 00 of 4 0.05Down
Larval Salivary gland3 10 of 4 0.24Down
Larval midgut574 494 of 436.41Up
Larval tubule2 00 of 4 0.20Down
Larval hindgut0 00 of 4 0.06Down
Larval fat body3 10 of 4 0.20Down
Larval trachea1 10 of 4 0.09Down
Larval carcass0 00 of 4 0.05Down
S2 cells (growing)1 10 of 4 0.10Down
Whole fly15 14 of 4

Looking for CG15170-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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