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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15179-RA through 18771 annotations produced 1 hits


sungrazer (sunz):

Annotation Number : CG15179
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037462
Gbrowse : chr3R:2455871-2456907 (+) // 100.0 //
Probeset : 1635923_at
Accessions : protein= NP_649673;, nucleotide= NM_141416;
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation
FlyMine data for FBgn0037462.
VDRC has 1 RNAi stocks for FBgn0037462 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head1 ± 00 of 4 0.00Down
Eye3 ± 10 of 4 0.09Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.00Down
Salivary gland6 ± 40 of 4 0.17Down
Crop1 ± 00 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart1 ± 00 of 4 0.03Down
Fat body1 ± 00 of 4 0.03Down
Ovary0 ± 00 of 4 0.00Down
Testis509 ± 54 of 413.50Up
Male accessory glands4 ± 20 of 4 0.10Down
Virgin spermatheca2 ± 10 of 4 0.06Down
Mated spermatheca0 ± 00 of 4 0.02Down
Adult carcass1 ± 00 of 4 0.00Down
Larval CNS1 ± 10 of 4 0.04Down
Larval Salivary gland1 ± 00 of 4 0.04Down
Larval midgut1 ± 00 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.03Down
Larval fat body30 ± 182 of 4 0.80None
Larval trachea6 ± 71 of 4 0.17Down
Larval carcass1 ± 00 of 4 0.05Down
S2 cells (growing)0 ± 00 of 4 0.02Down
Whole fly37 ± 34 of 4

Looking for CG15179-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime