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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15188-RA through 18771 annotations produced 1 hits

Osiris (Osi20):

Annotation Number : CG15188
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037430
Gbrowse : chr3R:2165818-2167152 (+) // 100.0 //
Probeset : 1633077_at
Accessions : protein= NP_649641;, nucleotide= NM_141384;
FlyMine data for FBgn0037430.
BDGP gene expression has embryonic in situ data for CG15188: 26 pix of staining in 4 body parts.
VDRC has 2 RNAi stocks for FBgn0037430 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 00 of 4 0.20None
Head3 10 of 4 0.20None
Eye1 00 of 4 0.05None
Thoracicoabdominal ganglion6 20 of 4 0.30None
Salivary gland5 10 of 4 0.25None
Crop9 11 of 4 0.40None
Midgut3 10 of 4 0.20None
Tubule4 00 of 4 0.20Down
Hindgut2 00 of 4 0.10None
Heart2 00 of 4 0.10None
Fat body4 20 of 4 0.21None
Ovary1 00 of 4 0.00None
Testis19 14 of 4 0.90None
Male accessory glands4 10 of 4 0.20None
Virgin spermatheca2 00 of 4 0.10None
Mated spermatheca3 10 of 4 0.14None
Adult carcass2 00 of 4 0.10None
Larval CNS1 00 of 4 0.07None
Larval Salivary gland2 00 of 4 0.12None
Larval midgut2 10 of 4 0.11None
Larval tubule4 00 of 4 0.20None
Larval hindgut3 00 of 4 0.15None
Larval fat body6 20 of 4 0.30None
Larval trachea3 30 of 4 0.14None
Larval carcass2 00 of 4 0.10None
S2 cells (growing)2 10 of 4 0.13None
Whole fly21 93 of 4

Looking for CG15188-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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