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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15189-RA through 18771 annotations produced 1 hits



Osiris (Osi19):

Annotation Number : CG15189
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0037429
Gbrowse : chr3R:2161085-2162918 (+) // 100.0 //
Probeset : 1628555_at
Accessions : protein= NP_001163529; /// NP_649640;, nucleotide= NM_001170058; /// NM_141383;
FlyMine data for FBgn0037429.
VDRC has 1 RNAi stocks for FBgn0037429 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain7 10 of 4 0.50None
Head4 10 of 4 0.30None
Eye2 10 of 4 0.19None
Thoracicoabdominal ganglion3 10 of 4 0.20None
Salivary gland16 71 of 4 1.03None
Crop5 10 of 4 0.40None
Midgut4 00 of 4 0.30None
Tubule9 00 of 4 0.60Down
Hindgut3 00 of 4 0.20None
Heart5 10 of 4 0.35None
Fat body10 40 of 4 0.64None
Ovary6 10 of 4 0.40None
Testis4 01 of 4 0.30None
Male accessory glands3 00 of 4 0.20None
Virgin spermatheca6 00 of 4 0.44None
Mated spermatheca5 10 of 4 0.35None
Adult carcass6 00 of 4 0.40None
Larval CNS5 10 of 4 0.38None
Larval Salivary gland3 10 of 4 0.24None
Larval midgut1 00 of 4 0.11None
Larval tubule5 10 of 4 0.30None
Larval hindgut4 10 of 4 0.25None
Larval fat body12 10 of 4 0.80None
Larval trachea21 74 of 4 1.34None
Larval carcass8 00 of 4 0.55None
S2 cells (growing)6 30 of 4 0.40None
Whole fly15 62 of 4

Looking for CG15189-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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