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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15204-RA through 18771 annotations produced 2 hits



CG12626 (CG42339):

Annotation Number : CG12626
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259241
Gbrowse : chrX:10931363-10931748 (-) // 100.0 //
Probeset : 1638985_at
Accessions : protein= NP_572674; /// NP_652466;, nucleotide= NM_132446; /// NM_144209; /// NM_144209;
Interpro : 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // i
FlyMine data for FBgn0259241.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain64 ± 32 of 436.20Up
Head10 ± 50 of 4 5.70None
Eye5 ± 10 of 4 2.82None
Thoracicoabdominal ganglion5 ± 10 of 4 3.20None
Salivary gland3 ± 10 of 4 2.17None
Crop5 ± 10 of 4 2.90None
Midgut3 ± 00 of 4 2.20None
Tubule2 ± 00 of 4 1.30Up
Hindgut3 ± 00 of 4 1.70None
Heart3 ± 10 of 4 1.87None
Fat body5 ± 10 of 4 3.28Up
Ovary2 ± 00 of 4 1.60None
Testis6 ± 20 of 4 3.60None
Male accessory glands5 ± 20 of 4 3.30None
Virgin spermatheca6 ± 10 of 4 3.85None
Mated spermatheca7 ± 30 of 4 4.06None
Adult carcass3 ± 00 of 4 2.00None
Larval CNS13 ± 20 of 4 7.32Up
Larval Salivary gland3 ± 00 of 4 1.66None
Larval midgut2 ± 00 of 4 1.45None
Larval tubule2 ± 00 of 4 1.60None
Larval hindgut6 ± 20 of 4 3.56None
Larval fat body4 ± 10 of 4 2.60None
Larval trachea4 ± 40 of 4 2.42None
Larval carcass7 ± 20 of 4 3.99None
S2 cells (growing)2 ± 00 of 4 1.14None
Whole fly1 ± 00 of 4



CG12626 (CG42339):

Annotation Number : CG15204
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259241
Gbrowse : chrX:10862776-10863434 (-) // 100.0 //
Probeset : 1630507_at
Accessions : protein= NP_572674; /// NP_652466;, nucleotide= NM_132446; /// NM_144209; /// NM_144209;
Interpro : 0005044 // scavenger receptor activity // inferred from electronic annotation /// 0030247 // polysaccharide binding // i
FlyMine data for FBgn0259241.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain43 ± 24 of 415.40None
Head9 ± 30 of 4 3.30None
Eye0 ± 00 of 4 0.32None
Thoracicoabdominal ganglion3 ± 10 of 4 1.40None
Salivary gland2 ± 10 of 4 1.04None
Crop3 ± 10 of 4 1.20None
Midgut1 ± 00 of 4 0.70None
Tubule3 ± 10 of 4 1.10None
Hindgut2 ± 10 of 4 0.90None
Heart1 ± 00 of 4 0.38None
Fat body2 ± 00 of 4 0.82None
Ovary2 ± 00 of 4 1.00None
Testis1 ± 00 of 4 0.70None
Male accessory glands4 ± 10 of 4 1.50None
Virgin spermatheca1 ± 00 of 4 0.62None
Mated spermatheca1 ± 00 of 4 0.57None
Adult carcass2 ± 00 of 4 0.80None
Larval CNS7 ± 31 of 4 2.70None
Larval Salivary gland4 ± 10 of 4 1.50None
Larval midgut1 ± 00 of 4 0.62None
Larval tubule6 ± 10 of 4 2.20None
Larval hindgut2 ± 00 of 4 0.86None
Larval fat body1 ± 00 of 4 0.50None
Larval trachea1 ± 10 of 4 0.40None
Larval carcass3 ± 10 of 4 1.07None
S2 cells (growing)1 ± 00 of 4 0.41None
Whole fly2 ± 10 of 4

Looking for CG15204-RA. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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