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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15213-RA through 18771 annotations produced 2 hits



(CG15213):

Annotation Number : CG15213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040843
Gbrowse : chr3L:5125997-5126245 (-) // 100.0 //
Probeset : 1631522_x_at
Accessions : protein= NP_652459;, nucleotide= NM_144202;
FlyMine data for FBgn0040843.
VDRC has 3 RNAi stocks for FBgn0040843 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head32 40 of 4 1.20None
Eye1 00 of 4 0.06Down
Thoracicoabdominal ganglion4 10 of 4 0.10Down
Salivary gland17 50 of 4 0.62None
Crop1702 984 of 460.40Up
Midgut35 40 of 4 1.30None
Tubule6 00 of 4 0.20Down
Hindgut103 64 of 4 3.70Up
Heart2 10 of 4 0.10Down
Fat body9 40 of 4 0.34Down
Ovary8 20 of 4 0.30Down
Testis12 20 of 4 0.40Down
Male accessory glands9 30 of 4 0.30Down
Virgin spermatheca10 20 of 4 0.36Down
Mated spermatheca13 40 of 4 0.48None
Adult carcass5 10 of 4 0.20Down
Larval CNS9 10 of 4 0.32Down
Larval Salivary gland7 20 of 4 0.28Down
Larval midgut60 120 of 4 2.14None
Larval tubule15 50 of 4 0.50None
Larval hindgut1816 1044 of 464.46Up
Larval fat body22 60 of 4 0.80None
Larval trachea5 40 of 4 0.19Down
Larval carcass181 354 of 4 6.44Up
S2 cells (growing)14 10 of 4 0.51None
Whole fly28 52 of 4



(CG15213):

Annotation Number : CG15213
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040843
Gbrowse : chr3L:5125997-5126245 (-) // 100.0 //
Probeset : 1627583_at
Accessions : protein= NP_652459;, nucleotide= NM_144202;
FlyMine data for FBgn0040843.
VDRC has 3 RNAi stocks for FBgn0040843 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 00 of 4 0.10Down
Head31 00 of 4 1.20None
Eye4 10 of 4 0.18Down
Thoracicoabdominal ganglion2 00 of 4 0.10Down
Salivary gland6 10 of 4 0.25None
Crop1689 824 of 464.90Up
Midgut30 40 of 4 1.20None
Tubule5 10 of 4 0.20Down
Hindgut111 44 of 4 4.30Up
Heart9 10 of 4 0.36None
Fat body16 110 of 4 0.63None
Ovary6 20 of 4 0.20None
Testis4 10 of 4 0.20Down
Male accessory glands3 10 of 4 0.10Down
Virgin spermatheca13 30 of 4 0.50None
Mated spermatheca6 30 of 4 0.25None
Adult carcass17 30 of 4 0.70None
Larval CNS12 30 of 4 0.49None
Larval Salivary gland4 10 of 4 0.18None
Larval midgut68 80 of 4 2.61Up
Larval tubule9 30 of 4 0.30None
Larval hindgut1687 1074 of 464.76Up
Larval fat body20 50 of 4 0.80None
Larval trachea6 30 of 4 0.26None
Larval carcass176 383 of 4 6.77Up
S2 cells (growing)8 30 of 4 0.31None
Whole fly26 70 of 4

Looking for CG15213-RA. 2 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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