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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15221-RA through 18771 annotations produced 1 hits



(CG15221):

Annotation Number : CG15221
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030331
Gbrowse : chrX:11628221-11629944 (+) // 100.0 //
Probeset : 1631969_at
Accessions : protein= NP_001096957;, nucleotide= NM_001103487;
Interpro : 0008513 // secondary active organic cation transmembrane transporter activity // inferred from sequence or structural si
FlyMine data for FBgn0030331.
TRiP has 1 RNAi stocks for FBgn0030331 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030331 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.30Down
Head1 00 of 4 0.10Down
Eye2 10 of 4 0.18Down
Thoracicoabdominal ganglion0 00 of 4 0.10Down
Salivary gland3 00 of 4 0.23Down
Crop0 00 of 4 0.00Down
Midgut1 00 of 4 0.10Down
Tubule594 1474 of 445.20Up
Hindgut25 20 of 4 1.90Up
Heart1 00 of 4 0.11Down
Fat body1 00 of 4 0.09Down
Ovary4 10 of 4 0.40Down
Testis1 00 of 4 0.10Down
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.09Down
Mated spermatheca0 00 of 4 0.06Down
Adult carcass2 00 of 4 0.20Down
Larval CNS0 00 of 4 0.06Down
Larval Salivary gland2 00 of 4 0.16Down
Larval midgut1 00 of 4 0.08Down
Larval tubule148 264 of 411.30Up
Larval hindgut2 00 of 4 0.17Down
Larval fat body1 00 of 4 0.10Down
Larval trachea0 00 of 4 0.06Down
Larval carcass1 00 of 4 0.11Down
S2 cells (growing)0 00 of 4 0.07Down
Whole fly13 10 of 4

Looking for CG15221-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime