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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15224-RB through 18771 annotations produced 2 hits



chrX:11686568-11691957 (+) // 99.87 // (casein kinase 2):

Annotation Number : CG15224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1628344_at
Accessions : protein= , nucleotide= NP_001014731; /// NP_511131; /// NP_542940; /// NP_727561; /// NP_727562; /// NP_996415;
Pathway : 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // non-traceable
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // c
FlyMine data for full length.
BioGrid reports that CG15224 interacts with CG15729 CG6724 CG8159 CG15646 CG15871 CG1641 CG17058 CG17127 CG17230 CG17520 CG17931 CG1971 CG2184 CG3052 CG3082 CG3929 CG4281 CG4617 CG4756 CG4820 CG5216 CG5352 CG5441 CG6510 CG6554 CG7650 CG7808 CG9277 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 34 of 4 2.20Up
Head9 13 of 4 0.40Down
Eye8 10 of 4 0.40Down
Thoracicoabdominal ganglion27 14 of 4 1.30None
Salivary gland19 42 of 4 0.94None
Crop25 24 of 4 1.20None
Midgut13 14 of 4 0.70None
Tubule8 01 of 4 0.40Down
Hindgut14 14 of 4 0.70None
Heart11 10 of 4 0.56None
Fat body15 14 of 4 0.76None
Ovary68 44 of 4 3.30Up
Testis5 02 of 4 0.30Down
Male accessory glands21 34 of 4 1.00None
Virgin spermatheca9 04 of 4 0.44Down
Mated spermatheca13 24 of 4 0.66None
Adult carcass13 31 of 4 0.60None
Larval CNS286 394 of 413.79Up
Larval Salivary gland37 34 of 4 1.81Up
Larval midgut18 14 of 4 0.90None
Larval tubule21 14 of 4 1.00None
Larval hindgut31 34 of 4 1.53None
Larval fat body29 54 of 4 1.40None
Larval trachea61 164 of 4 2.95Up
Larval carcass67 34 of 4 3.26Up
S2 cells (growing)108 34 of 4 5.21Up
Whole fly20 34 of 4



chrX:11686913-11689893 (+) // 100.0 // (casein kinase 2):

Annotation Number : CG15224
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : full length
Gbrowse : March 2006 (FlyBase/BDGP 5.3)
Probeset : 1637769_s_at
Accessions : protein= , nucleotide= NP_001014731; /// NP_511131; /// NP_542940; /// NP_727561; /// NP_727562; /// NP_996415;
Pathway : 0006468 // protein phosphorylation // inferred from direct assay /// 0006468 // protein phosphorylation // non-traceable
Interpro : 0005634 // nucleus // inferred from direct assay /// 0005737 // cytoplasm // inferred from direct assay /// 0005829 // c
FlyMine data for full length.
BioGrid reports that CG15224 interacts with CG15729 CG6724 CG8159 CG15646 CG15871 CG1641 CG17058 CG17127 CG17230 CG17520 CG17931 CG1971 CG2184 CG3052 CG3082 CG3929 CG4281 CG4617 CG4756 CG4820 CG5216 CG5352 CG5441 CG6510 CG6554 CG7650 CG7808 CG9277 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain382 84 of 4 0.60Down
Head221 384 of 4 0.30Down
Eye286 264 of 4 0.44Down
Thoracicoabdominal ganglion275 294 of 4 0.40Down
Salivary gland385 204 of 4 0.59Down
Crop383 84 of 4 0.60Down
Midgut433 154 of 4 0.70Down
Tubule167 184 of 4 0.30Down
Hindgut291 84 of 4 0.40Down
Heart337 74 of 4 0.52Down
Fat body248 364 of 4 0.38Down
Ovary1108 124 of 4 1.70Up
Testis243 74 of 4 0.40Down
Male accessory glands503 144 of 4 0.80Down
Virgin spermatheca161 74 of 4 0.25Down
Mated spermatheca175 144 of 4 0.27Down
Adult carcass269 54 of 4 0.40Down
Larval CNS533 374 of 4 0.82Down
Larval Salivary gland723 424 of 4 1.11None
Larval midgut350 84 of 4 0.54Down
Larval tubule481 104 of 4 0.70Down
Larval hindgut404 44 of 4 0.62Down
Larval fat body515 294 of 4 0.80Down
Larval trachea1182 634 of 4 1.81Up
Larval carcass664 114 of 4 1.02None
S2 cells (growing)650 164 of 4 1.00None
Whole fly653 224 of 4

Looking for CG15224-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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