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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15233-RA through 18771 annotations produced 1 hits



(CG15233):

Annotation Number : CG15233
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033076
Gbrowse : chr2R:2487409-2488483 (-) // 100.0 //
Probeset : 1637919_at
Accessions : protein= NP_610214;, nucleotide= NM_136370;
FlyMine data for FBgn0033076.
BDGP gene expression has embryonic in situ data for CG15233: 4 pix of staining in 1 body parts.
VDRC has 3 RNAi stocks for FBgn0033076 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye1 10 of 4 0.15Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland5 20 of 4 0.46None
Crop2 10 of 4 0.20Down
Midgut1 00 of 4 0.10Down
Tubule1 00 of 4 0.10Down
Hindgut1 00 of 4 0.10Down
Heart1 00 of 4 0.10Down
Fat body1 00 of 4 0.11Down
Ovary1 00 of 4 0.10Down
Testis148 34 of 411.60Up
Male accessory glands1 00 of 4 0.10Down
Virgin spermatheca1 00 of 4 0.12Down
Mated spermatheca1 10 of 4 0.14Down
Adult carcass5 20 of 4 0.40Down
Larval CNS0 00 of 4 0.06Down
Larval Salivary gland6 00 of 4 0.51Down
Larval midgut4 20 of 4 0.37Down
Larval tubule0 00 of 4 0.10Down
Larval hindgut1 00 of 4 0.10Down
Larval fat body26 112 of 4 2.00None
Larval trachea3 10 of 4 0.26Down
Larval carcass0 00 of 4 0.04Down
S2 cells (growing)1 00 of 4 0.10Down
Whole fly12 03 of 4

Looking for CG15233-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime