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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15234-RA through 18771 annotations produced 1 hits



(CG15234):

Annotation Number : CG15234
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0040673
Gbrowse : chr2R:2494494-2500518 (-) // 100.0 //
Probeset : 1634292_at
Accessions : protein= NP_652313;, nucleotide= NM_144056;
FlyMine data for FBgn0040673.
BioGrid reports that CG15234 interacts with CG5094 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.30None
Head8 ± 11 of 4 1.70None
Eye4 ± 20 of 4 0.97None
Thoracicoabdominal ganglion3 ± 10 of 4 0.80None
Salivary gland19 ± 31 of 4 4.08Up
Crop5 ± 10 of 4 1.10None
Midgut3 ± 00 of 4 0.60None
Tubule4 ± 00 of 4 0.90None
Hindgut7 ± 10 of 4 1.60None
Heart2 ± 00 of 4 0.51None
Fat body8 ± 31 of 4 1.82None
Ovary1 ± 00 of 4 0.40None
Testis1 ± 00 of 4 0.40None
Male accessory glands6 ± 10 of 4 1.30None
Virgin spermatheca7 ± 11 of 4 1.58None
Mated spermatheca9 ± 02 of 4 2.01Up
Adult carcass6 ± 20 of 4 1.30None
Larval CNS5 ± 12 of 4 1.13None
Larval Salivary gland7 ± 10 of 4 1.47None
Larval midgut4 ± 10 of 4 0.85None
Larval tubule5 ± 10 of 4 1.20None
Larval hindgut4 ± 10 of 4 0.90None
Larval fat body6 ± 10 of 4 1.30None
Larval trachea3 ± 10 of 4 0.79None
Larval carcass4 ± 10 of 4 1.00None
S2 cells (growing)2 ± 00 of 4 0.50None
Whole fly4 ± 10 of 4

Looking for CG15234-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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