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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15236-RB through 18771 annotations produced 1 hits



(CG15236):

Annotation Number : CG15236
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0033108
Gbrowse : chr2R:2715862-2725865 (+) // 100.0 //
Probeset : 1628263_s_at
Accessions : protein= NP_610241; /// NP_724506;, nucleotide= NM_136397; /// NM_165493;
FlyMine data for FBgn0033108.
BDGP gene expression has embryonic in situ data for CG15236: 18 pix of staining in 7 body parts.
TRiP has 1 RNAi stocks for FBgn0033108 available for purchase.
VDRC has 1 RNAi stocks for FBgn0033108 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain981 ± 374 of 452.40Up
Head218 ± 34 of 411.60Up
Eye102 ± 124 of 4 5.49Up
Thoracicoabdominal ganglion325 ± 94 of 417.40Up
Salivary gland8 ± 20 of 4 0.47Down
Crop7 ± 00 of 4 0.40Down
Midgut4 ± 10 of 4 0.20Down
Tubule3 ± 00 of 4 0.20Down
Hindgut4 ± 00 of 4 0.20Down
Heart1 ± 00 of 4 0.09Down
Fat body7 ± 24 of 4 0.38Down
Ovary0 ± 00 of 4 0.00Down
Testis6 ± 02 of 4 0.30Down
Male accessory glands27 ± 14 of 4 1.50Up
Virgin spermatheca3 ± 10 of 4 0.21Down
Mated spermatheca5 ± 11 of 4 0.28Down
Adult carcass5 ± 10 of 4 0.30Down
Larval CNS329 ± 214 of 417.57Up
Larval Salivary gland2 ± 10 of 4 0.14Down
Larval midgut3 ± 00 of 4 0.16Down
Larval tubule3 ± 10 of 4 0.20Down
Larval hindgut4 ± 00 of 4 0.24Down
Larval fat body2 ± 00 of 4 0.10Down
Larval trachea5 ± 41 of 4 0.27Down
Larval carcass0 ± 00 of 4 0.04Down
S2 cells (growing)2 ± 11 of 4 0.13Down
Whole fly18 ± 24 of 4

Looking for CG15236-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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