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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15255-RA through 18771 annotations produced 1 hits



(CG15255):

Annotation Number : CG15255
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028950
Gbrowse : chr2L:15610899-15612091 (-) // 100.0 //
Probeset : 1629633_at
Accessions : protein= NP_609755;, nucleotide= NM_135911;
Interpro : 0004222 // metalloendopeptidase activity // inferred from sequence or structural similarity /// 0004222 // metalloendope
FlyMine data for FBgn0028950.
VDRC has 2 RNAi stocks for FBgn0028950 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 11 of 4 0.00Down
Head3 ± 01 of 4 0.00Down
Eye4 ± 10 of 4 0.01Down
Thoracicoabdominal ganglion3 ± 00 of 4 0.00Down
Salivary gland10 ± 51 of 4 0.02Down
Crop7 ± 02 of 4 0.00Down
Midgut5115 ± 1504 of 4 8.70Up
Tubule19 ± 63 of 4 0.00Down
Hindgut728 ± 474 of 4 1.20None
Heart4 ± 01 of 4 0.01Down
Fat body9 ± 42 of 4 0.02Down
Ovary3 ± 00 of 4 0.00Down
Testis3 ± 10 of 4 0.00Down
Male accessory glands15 ± 13 of 4 0.00Down
Virgin spermatheca7 ± 22 of 4 0.01Down
Mated spermatheca7 ± 11 of 4 0.01Down
Adult carcass11 ± 22 of 4 0.00Down
Larval CNS4 ± 01 of 4 0.01Down
Larval Salivary gland8 ± 11 of 4 0.01Down
Larval midgut1664 ± 2454 of 4 2.83Up
Larval tubule12 ± 24 of 4 0.00Down
Larval hindgut633 ± 944 of 4 1.08None
Larval fat body7 ± 11 of 4 0.00Down
Larval trachea6 ± 30 of 4 0.01Down
Larval carcass8 ± 12 of 4 0.01Down
S2 cells (growing)7 ± 03 of 4 0.01Down
Whole fly587 ± 694 of 4

Looking for CG15255-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime