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FlyAtlas: the Drosophila gene expression atlas

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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15257-RB through 18771 annotations produced 2 hits



Translocase inner membrane 17 (Tim17b2):

Annotation Number : CG15257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020371
Gbrowse : chr2L:15484767-15494204 (+) // 100.0 //
Probeset : 1628280_at
Accessions : protein= NP_524746; /// NP_788070;, nucleotide= NM_080007; /// NM_176056;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membra
Interpro : 0008565 // protein transporter activity // inferred from electronic annotation /// 0008566 // mitochondrial protein-tran
FlyMine data for FBgn0020371.
VDRC has 2 RNAi stocks for FBgn0020371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 1.20None
Head0 ± 00 of 4 0.90None
Eye0 ± 00 of 4 0.70None
Thoracicoabdominal ganglion1 ± 00 of 4 1.60None
Salivary gland4 ± 10 of 4 6.15None
Crop0 ± 00 of 4 1.30None
Midgut0 ± 00 of 4 1.20None
Tubule1 ± 00 of 4 2.20Up
Hindgut0 ± 00 of 4 0.60None
Heart0 ± 00 of 4 0.67None
Fat body1 ± 00 of 4 1.59None
Ovary0 ± 00 of 4 1.00None
Testis2 ± 00 of 4 2.90None
Male accessory glands1 ± 00 of 4 2.10None
Virgin spermatheca1 ± 00 of 4 1.96None
Mated spermatheca2 ± 00 of 4 3.07None
Adult carcass2 ± 10 of 4 3.90None
Larval CNS1 ± 00 of 4 1.56None
Larval Salivary gland1 ± 00 of 4 2.41None
Larval midgut0 ± 00 of 4 1.37None
Larval tubule1 ± 00 of 4 2.20None
Larval hindgut0 ± 00 of 4 1.19None
Larval fat body1 ± 00 of 4 2.90None
Larval trachea1 ± 10 of 4 1.67None
Larval carcass1 ± 00 of 4 2.52None
S2 cells (growing)1 ± 10 of 4 2.11None
Whole fly0 ± 00 of 4



Translocase inner membrane 17 (Tim17b2):

Annotation Number : CG15257
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0020371
Gbrowse : chr2L:15484767-15485490 (+) // 100.0 //
Probeset : 1635155_a_at
Accessions : protein= NP_524746; /// NP_788070;, nucleotide= NM_080007; /// NM_176056;
Pathway : 0005743 // mitochondrial inner membrane // inferred from electronic annotation /// 0005744 // mitochondrial inner membra
Interpro : 0008565 // protein transporter activity // inferred from electronic annotation /// 0008566 // mitochondrial protein-tran
FlyMine data for FBgn0020371.
VDRC has 2 RNAi stocks for FBgn0020371 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.00Down
Head0 ± 00 of 4 0.00Down
Eye1 ± 00 of 4 0.01Down
Thoracicoabdominal ganglion1 ± 00 of 4 0.00Down
Salivary gland4 ± 10 of 4 0.04Down
Crop3 ± 10 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut0 ± 00 of 4 0.00Down
Heart0 ± 00 of 4 0.01Down
Fat body0 ± 00 of 4 0.01Down
Ovary1 ± 00 of 4 0.00Down
Testis1402 ± 524 of 412.80Up
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca0 ± 00 of 4 0.01Down
Mated spermatheca3 ± 10 of 4 0.04Down
Adult carcass2 ± 00 of 4 0.00Down
Larval CNS1 ± 00 of 4 0.01Down
Larval Salivary gland3 ± 10 of 4 0.03Down
Larval midgut3 ± 10 of 4 0.03Down
Larval tubule1 ± 00 of 4 0.00Down
Larval hindgut1 ± 00 of 4 0.01Down
Larval fat body191 ± 1123 of 4 1.70None
Larval trachea5 ± 71 of 4 0.05Down
Larval carcass4 ± 10 of 4 0.04Down
S2 cells (growing)0 ± 00 of 4 0.01Down
Whole fly110 ± 14 of 4

Looking for CG15257-RB. 2 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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