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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15262-RA through 18771 annotations produced 1 hits



(CG15262):

Annotation Number : CG15262
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028852
Gbrowse : chr2L:15297352-15299263 (+) // 100.0 //
Probeset : 1630325_at
Accessions : protein= NP_609750;, nucleotide= NM_135906;
Pathway : 0005634 // nucleus // inferred from electronic annotation
Interpro : 0030528 // transcription regulator activity // inferred from electronic annotation
FlyMine data for FBgn0028852.
BioGrid reports that CG15262 interacts with CG3647 .
VDRC has 2 RNAi stocks for FBgn0028852 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 10 of 4 0.20Down
Head4 10 of 4 0.20Down
Eye2 00 of 4 0.16Down
Thoracicoabdominal ganglion5 10 of 4 0.30Down
Salivary gland14 10 of 4 0.83None
Crop6 00 of 4 0.40Down
Midgut6 10 of 4 0.30Down
Tubule4 00 of 4 0.30Down
Hindgut4 00 of 4 0.20Down
Heart2 10 of 4 0.17Down
Fat body6 30 of 4 0.36Down
Ovary2 10 of 4 0.10Down
Testis250 54 of 414.30Up
Male accessory glands8 30 of 4 0.50None
Virgin spermatheca5 00 of 4 0.33Down
Mated spermatheca8 00 of 4 0.48Down
Adult carcass9 00 of 4 0.60Down
Larval CNS1 10 of 4 0.09Down
Larval Salivary gland11 11 of 4 0.63Down
Larval midgut11 11 of 4 0.66Down
Larval tubule6 10 of 4 0.30Down
Larval hindgut4 01 of 4 0.25Down
Larval fat body49 223 of 4 2.80None
Larval trachea3 21 of 4 0.18Down
Larval carcass6 22 of 4 0.39Down
S2 cells (growing)2 00 of 4 0.16Down
Whole fly17 14 of 4

Looking for CG15262-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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