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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15267-RA through 18771 annotations produced 1 hits



down and out (dao):

Annotation Number : CG15267
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028862
Gbrowse : chr2L:15248884-15253613 (+) // 99.77 //
Probeset : 1627862_at
Accessions : protein= NP_609742;, nucleotide= NM_135898;
Pathway : 0005886 // plasma membrane // inferred from direct assay
Interpro : 0005488 // binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from physical inter
FlyMine data for FBgn0028862.
BDGP gene expression has embryonic in situ data for BG:DS07295.2: 4 pix of staining in 1 body parts.
BioGrid reports that CG15267 interacts with CG32485 .
VDRC has 3 RNAi stocks for FBgn0028862 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain147 ± 34 of 4 8.20Up
Head35 ± 04 of 4 2.00Up
Eye80 ± 54 of 4 4.47Up
Thoracicoabdominal ganglion205 ± 44 of 411.40Up
Salivary gland12 ± 30 of 4 0.67None
Crop11 ± 11 of 4 0.60None
Midgut5 ± 10 of 4 0.30Down
Tubule7 ± 11 of 4 0.40Down
Hindgut2 ± 10 of 4 0.10Down
Heart4 ± 10 of 4 0.23Down
Fat body19 ± 24 of 4 1.05None
Ovary28 ± 24 of 4 1.60None
Testis6 ± 13 of 4 0.40None
Male accessory glands8 ± 30 of 4 0.50None
Virgin spermatheca14 ± 13 of 4 0.83None
Mated spermatheca14 ± 42 of 4 0.81None
Adult carcass17 ± 32 of 4 1.00None
Larval CNS56 ± 74 of 4 3.14Up
Larval Salivary gland10 ± 10 of 4 0.57None
Larval midgut4 ± 10 of 4 0.25Down
Larval tubule8 ± 10 of 4 0.50None
Larval hindgut3 ± 10 of 4 0.21Down
Larval fat body10 ± 23 of 4 0.60None
Larval trachea6 ± 40 of 4 0.36None
Larval carcass6 ± 00 of 4 0.35None
S2 cells (growing)2 ± 00 of 4 0.13Down
Whole fly18 ± 34 of 4

Looking for CG15267-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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