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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15269-RA through 18771 annotations produced 1 hits



(CG15269):

Annotation Number : CG15269
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028878
Gbrowse : chr2L:15109584-15112914 (+) // 100.0 //
Probeset : 1638688_at
Accessions : protein= NP_609739;, nucleotide= NM_135895;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from sequence or structural similarity /// 0003676 // nucleic acid binding /
FlyMine data for FBgn0028878.
Homophila reports that CG15269 is a close match (3e-11) to human gene FKLF;FKLF1;KLF11;MODY7;TIEG2 (NP_003588), a gene associated with Maturity-onset diabetes of the young, type VII, 610508 (3).
BioGrid reports that CG15269 interacts with CG3953 .
VDRC has 3 RNAi stocks for FBgn0028878 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.80None
Head1 00 of 4 0.80None
Eye1 00 of 4 0.89None
Thoracicoabdominal ganglion1 10 of 4 1.20None
Salivary gland3 10 of 4 2.62None
Crop0 00 of 4 0.50None
Midgut0 00 of 4 0.60None
Tubule1 00 of 4 0.90None
Hindgut1 10 of 4 1.30None
Heart1 00 of 4 1.11None
Fat body1 00 of 4 1.11None
Ovary1 00 of 4 1.20None
Testis0 00 of 4 0.40None
Male accessory glands1 00 of 4 1.00None
Virgin spermatheca2 10 of 4 1.72None
Mated spermatheca0 00 of 4 0.40None
Adult carcass1 00 of 4 1.10None
Larval CNS1 10 of 4 1.36None
Larval Salivary gland1 00 of 4 1.13None
Larval midgut0 00 of 4 0.55None
Larval tubule0 00 of 4 0.60None
Larval hindgut0 00 of 4 0.32None
Larval fat body0 00 of 4 0.50None
Larval trachea5 31 of 4 4.26None
Larval carcass2 00 of 4 1.72None
S2 cells (growing)0 00 of 4 0.49None
Whole fly1 00 of 4

Looking for CG15269-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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