Flyatlas logo

FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
Home & Search
Batch/table Search
Tissues Search
BLASTP Search
About & FAQ
Top 50
Original data
Interesting meta-analysis
Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1527-RA through 18771 annotations produced 1 hits



Ribosomal protein S14b (RpS14b):

Annotation Number : CG1527
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0004404
Gbrowse : chrX:7828936-7829832 (+) // 100.0 //
Probeset : 1624337_at
Accessions : protein= NP_524884; /// NP_536352; /// NP_727218;, nucleotide= NM_080145; /// NM_080427; /// NM_167137;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005811 // lipid particle // inferred from direct as
Interpro : 0003735 // structural constituent of ribosome // inferred from sequence or structural similarity /// 0003735 // structur
FlyMine data for FBgn0004404.
BioGrid reports that CG1527 interacts with CG8816 CG16890 CG30115 CG32354 CG5053 CG7146 CG9117 CG33275 .
VDRC has 1 RNAi stocks for FBgn0004404 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain861 ± 104 of 4 0.90None
Head1272 ± 884 of 4 1.30Up
Eye1674 ± 234 of 4 1.77Up
Thoracicoabdominal ganglion949 ± 494 of 4 1.00None
Salivary gland1618 ± 704 of 4 1.71Up
Crop1409 ± 454 of 4 1.50Up
Midgut1320 ± 294 of 4 1.40Up
Tubule485 ± 144 of 4 0.50Down
Hindgut1590 ± 144 of 4 1.70Up
Heart1782 ± 814 of 4 1.88Up
Fat body2051 ± 1024 of 4 2.17Up
Ovary884 ± 184 of 4 0.90None
Testis187 ± 84 of 4 0.20Down
Male accessory glands1816 ± 1354 of 4 1.90Up
Virgin spermatheca819 ± 244 of 4 0.87None
Mated spermatheca841 ± 294 of 4 0.89None
Adult carcass1139 ± 334 of 4 1.20Up
Larval CNS1186 ± 574 of 4 1.25Up
Larval Salivary gland1441 ± 1454 of 4 1.52Up
Larval midgut1353 ± 354 of 4 1.43Up
Larval tubule1496 ± 264 of 4 1.60Up
Larval hindgut1493 ± 404 of 4 1.58Up
Larval fat body1549 ± 1924 of 4 1.60Up
Larval trachea1724 ± 1254 of 4 1.82Up
Larval carcass1441 ± 504 of 4 1.52Up
S2 cells (growing)1755 ± 234 of 4 1.85Up
Whole fly946 ± 624 of 4

Looking for CG1527-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime