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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15275-RA through 18771 annotations produced 1 hits



CG33515 (CG42313):

Annotation Number : CG15275
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259213
Gbrowse : chr2L:14935872-14936596 (-) // 100.0 //
Probeset : 1625299_at
Accessions : protein= NP_001014485;, nucleotide= NM_001014485;
Pathway : 0016020 // membrane // inferred from electronic annotation
FlyMine data for FBgn0259213.
VDRC has 7 RNAi stocks for FBgn0259213 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 24 of 4 9.40Up
Head2 10 of 4 1.80None
Eye3 11 of 4 2.47None
Thoracicoabdominal ganglion9 33 of 4 6.60None
Salivary gland8 30 of 4 5.73None
Crop0 00 of 4 0.50None
Midgut4 10 of 4 2.70None
Tubule3 00 of 4 2.10Up
Hindgut2 00 of 4 1.70None
Heart0 00 of 4 0.59None
Fat body5 20 of 4 3.47None
Ovary0 00 of 4 0.40None
Testis5 03 of 4 3.60Up
Male accessory glands5 30 of 4 3.80None
Virgin spermatheca2 10 of 4 1.69None
Mated spermatheca2 10 of 4 1.46None
Adult carcass1 00 of 4 1.30None
Larval CNS5 02 of 4 3.54Up
Larval Salivary gland6 00 of 4 4.39Up
Larval midgut2 10 of 4 1.46None
Larval tubule1 00 of 4 0.80None
Larval hindgut0 00 of 4 0.47None
Larval fat body4 10 of 4 3.10None
Larval trachea0 00 of 4 0.53None
Larval carcass0 00 of 4 0.47None
S2 cells (growing)2 01 of 4 1.36None
Whole fly1 00 of 4

Looking for CG15275-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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