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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1528-RA through 18771 annotations produced 1 hits



gamma-coatomer protein (gammaCop):

Annotation Number : CG1528
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028968
Gbrowse : chr3R:27397864-27401442 (+) // 100.0 //
Probeset : 1625155_a_at
Accessions : protein= NP_001163784; /// NP_524608; /// NP_733432;, nucleotide= NM_001170313; /// NM_079869; /// NM_170553;
Pathway : Golgi to ER // inferred from sequence or structural similarity /// 0006890 // retrograde vesicle-mediated transport
Interpro : Golgi to ER // non-traceable author statement /// 0006911 // phagocytosis
FlyMine data for FBgn0028968.
TRiP has 1 RNAi stocks for FBgn0028968 available for purchase.
VDRC has 1 RNAi stocks for FBgn0028968 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain263 74 of 4 0.80Down
Head278 34 of 4 0.80Down
Eye287 134 of 4 0.83None
Thoracicoabdominal ganglion306 104 of 4 0.90None
Salivary gland1569 514 of 4 4.55Up
Crop353 194 of 4 1.00None
Midgut405 94 of 4 1.20Up
Tubule442 164 of 4 1.30Up
Hindgut373 124 of 4 1.10None
Heart257 204 of 4 0.75Down
Fat body329 124 of 4 0.95None
Ovary393 54 of 4 1.10None
Testis150 64 of 4 0.40Down
Male accessory glands1626 684 of 4 4.70Up
Virgin spermatheca538 64 of 4 1.56Up
Mated spermatheca718 354 of 4 2.08Up
Adult carcass262 144 of 4 0.80Down
Larval CNS297 214 of 4 0.86None
Larval Salivary gland2256 1204 of 4 6.54Up
Larval midgut394 194 of 4 1.14None
Larval tubule534 104 of 4 1.50Up
Larval hindgut437 114 of 4 1.27Up
Larval fat body378 414 of 4 1.10None
Larval trachea452 764 of 4 1.31None
Larval carcass422 154 of 4 1.22Up
S2 cells (growing)956 194 of 4 2.77Up
Whole fly345 194 of 4

Looking for CG1528-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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