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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15282-RA through 18771 annotations produced 1 hits



(CG15282):

Annotation Number : CG15282
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0028855
Gbrowse : chr2L:14712664-14713267 (+) // 100.0 //
Probeset : 1626910_at
Accessions : protein= NP_609716;, nucleotide= NM_135872;
FlyMine data for FBgn0028855.
BDGP gene expression has embryonic in situ data for BG:DS07721.3: 18 pix of staining in 6 body parts.
VDRC has 1 RNAi stocks for FBgn0028855 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 00 of 4 0.10Down
Head197 144 of 413.00Up
Eye3 10 of 4 0.21Down
Thoracicoabdominal ganglion3 11 of 4 0.20Down
Salivary gland11 50 of 4 0.73None
Crop47 44 of 4 3.10Up
Midgut0 00 of 4 0.00Down
Tubule2 00 of 4 0.20Down
Hindgut2 00 of 4 0.20Down
Heart1 00 of 4 0.08Down
Fat body8 40 of 4 0.56None
Ovary1 00 of 4 0.10Down
Testis11 04 of 4 0.80None
Male accessory glands8 10 of 4 0.60None
Virgin spermatheca4 20 of 4 0.28Down
Mated spermatheca5 10 of 4 0.35Down
Adult carcass14 30 of 4 0.90None
Larval CNS7 04 of 4 0.50None
Larval Salivary gland2 00 of 4 0.15Down
Larval midgut6 10 of 4 0.44None
Larval tubule3 00 of 4 0.20Down
Larval hindgut287 304 of 418.97Up
Larval fat body6 22 of 4 0.40None
Larval trachea188 864 of 412.43Up
Larval carcass3285 2104 of 4216.54Up
S2 cells (growing)0 00 of 4 0.04Down
Whole fly15 24 of 4

Looking for CG15282-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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