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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15283-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG15283
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID :
Gbrowse : chr2L:14447376-14450816 (-) // 100.0 //
Probeset : 1641559_at
Accessions : protein= NP_652574;, nucleotide= NM_144317;


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.60None
Head2 ± 11 of 4 0.40None
Eye0 ± 00 of 4 0.16Down
Thoracicoabdominal ganglion4 ± 11 of 4 0.70None
Salivary gland5 ± 30 of 4 0.84None
Crop3 ± 00 of 4 0.60None
Midgut4 ± 00 of 4 0.80None
Tubule2 ± 00 of 4 0.40Down
Hindgut5 ± 11 of 4 0.80None
Heart2 ± 10 of 4 0.36None
Fat body5 ± 21 of 4 0.95None
Ovary1 ± 00 of 4 0.30None
Testis20 ± 14 of 4 3.50Up
Male accessory glands6 ± 10 of 4 1.20None
Virgin spermatheca5 ± 11 of 4 0.86None
Mated spermatheca5 ± 11 of 4 0.85None
Adult carcass6 ± 41 of 4 1.00None
Larval CNS2 ± 11 of 4 0.45None
Larval Salivary gland5 ± 20 of 4 0.91None
Larval midgut3 ± 10 of 4 0.64None
Larval tubule4 ± 00 of 4 0.80None
Larval hindgut3 ± 10 of 4 0.53None
Larval fat body8 ± 21 of 4 1.40None
Larval trachea1 ± 00 of 4 0.18Down
Larval carcass5 ± 11 of 4 0.86None
S2 cells (growing)1 ± 00 of 4 0.25Down
Whole fly5 ± 12 of 4

Looking for CG15283-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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