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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15287-RA through 18771 annotations produced 1 hits



():

Annotation Number : CG15287
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261529
Gbrowse : chr2L:14328428-14333867 (+) // 100.0 //
Probeset : 1624908_at
Accessions : protein= NP_609705;, nucleotide= NM_135861;
FlyMine data for FBgn0261529.
VDRC has 1 RNAi stocks for FBgn0261529 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 0.10Down
Head2 ± 10 of 4 0.10Down
Eye4 ± 00 of 4 0.09Down
Thoracicoabdominal ganglion3 ± 10 of 4 0.10Down
Salivary gland10 ± 40 of 4 0.20Down
Crop7 ± 10 of 4 0.20Down
Midgut7 ± 20 of 4 0.10Down
Tubule6 ± 00 of 4 0.10Down
Hindgut7 ± 01 of 4 0.10Down
Heart4 ± 10 of 4 0.10Down
Fat body5 ± 32 of 4 0.11Down
Ovary3 ± 00 of 4 0.10Down
Testis720 ± 154 of 414.40Up
Male accessory glands11 ± 10 of 4 0.20Down
Virgin spermatheca4 ± 00 of 4 0.09Down
Mated spermatheca8 ± 21 of 4 0.18Down
Adult carcass10 ± 31 of 4 0.20Down
Larval CNS4 ± 10 of 4 0.08Down
Larval Salivary gland11 ± 10 of 4 0.24Down
Larval midgut9 ± 20 of 4 0.18Down
Larval tubule7 ± 21 of 4 0.10Down
Larval hindgut9 ± 01 of 4 0.18Down
Larval fat body105 ± 694 of 4 2.10None
Larval trachea5 ± 41 of 4 0.11Down
Larval carcass8 ± 10 of 4 0.17Down
S2 cells (growing)4 ± 11 of 4 0.10Down
Whole fly50 ± 44 of 4

Looking for CG15287-RA. 1 entries matched from 18771, in 0 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime