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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15306-RA through 18771 annotations produced 1 hits


(CG15306):

Annotation Number : CG15306
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030191
Gbrowse : chrX:10224192-10225814 (-) // 99.75 //
Probeset : 1639662_at
Accessions : protein= NP_572618;, nucleotide= NM_132390;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030191.
BDGP gene expression has embryonic in situ data for CG15306: 8 pix of staining in 1 body parts.
BioGrid reports that CG15306 interacts with CG5450 CG6998 .
VDRC has 2 RNAi stocks for FBgn0030191 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 00 of 4 0.00Down
Head2 ± 10 of 4 0.00Down
Eye3 ± 10 of 4 0.03Down
Thoracicoabdominal ganglion2 ± 10 of 4 0.00Down
Salivary gland18 ± 11 of 4 0.14Down
Crop6 ± 20 of 4 0.00Down
Midgut2 ± 10 of 4 0.00Down
Tubule3 ± 00 of 4 0.00Down
Hindgut1 ± 00 of 4 0.00Down
Heart4 ± 11 of 4 0.03Down
Fat body7 ± 40 of 4 0.06Down
Ovary1 ± 00 of 4 0.00Down
Testis1797 ± 574 of 413.50Up
Male accessory glands4 ± 30 of 4 0.00Down
Virgin spermatheca5 ± 10 of 4 0.04Down
Mated spermatheca6 ± 20 of 4 0.04Down
Adult carcass8 ± 01 of 4 0.10Down
Larval CNS3 ± 20 of 4 0.02Down
Larval Salivary gland1 ± 00 of 4 0.01Down
Larval midgut5 ± 10 of 4 0.04Down
Larval tubule2 ± 00 of 4 0.00Down
Larval hindgut4 ± 10 of 4 0.03Down
Larval fat body286 ± 1554 of 4 2.10None
Larval trachea9 ± 121 of 4 0.07Down
Larval carcass6 ± 01 of 4 0.05Down
S2 cells (growing)2 ± 00 of 4 0.02Down
Whole fly133 ± 104 of 4

Looking for CG15306-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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