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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15309-RA through 18771 annotations produced 1 hits



(CG15309):

Annotation Number : CG15309
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030183
Gbrowse : chrX:10100616-10106379 (-) // 99.44 //
Probeset : 1627228_at
Accessions : protein= NP_001096936; /// NP_572609;, nucleotide= NM_001103466; /// NM_132381;
FlyMine data for FBgn0030183.
TRiP has 1 RNAi stocks for FBgn0030183 available for purchase.
VDRC has 3 RNAi stocks for FBgn0030183 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain281 ± 44 of 4 1.60Up
Head251 ± 154 of 4 1.40Up
Eye477 ± 264 of 4 2.70Up
Thoracicoabdominal ganglion325 ± 74 of 4 1.80Up
Salivary gland241 ± 214 of 4 1.37None
Crop266 ± 84 of 4 1.50Up
Midgut208 ± 54 of 4 1.20Up
Tubule324 ± 194 of 4 1.80Up
Hindgut209 ± 74 of 4 1.20Up
Heart360 ± 224 of 4 2.04Up
Fat body318 ± 484 of 4 1.80Up
Ovary198 ± 44 of 4 1.10Up
Testis63 ± 34 of 4 0.40Down
Male accessory glands226 ± 114 of 4 1.30Up
Virgin spermatheca432 ± 324 of 4 2.45Up
Mated spermatheca320 ± 194 of 4 1.81Up
Adult carcass234 ± 184 of 4 1.30Up
Larval CNS173 ± 154 of 4 0.98None
Larval Salivary gland120 ± 134 of 4 0.68Down
Larval midgut776 ± 1914 of 4 4.40None
Larval tubule1490 ± 584 of 4 8.40Up
Larval hindgut334 ± 504 of 4 1.89None
Larval fat body894 ± 1184 of 4 5.10Up
Larval trachea112 ± 284 of 4 0.64Down
Larval carcass333 ± 884 of 4 1.89None
S2 cells (growing)61 ± 14 of 4 0.35Down
Whole fly176 ± 44 of 4

Looking for CG15309-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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