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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15316-RB through 18771 annotations produced 1 hits



LDL-receptor-related protein (Megalin):

Annotation Number : CG15316
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0261260
Gbrowse : chrX:9315781-9394154 (-) // 99.64 //
Probeset : 1626356_s_at
Accessions : protein= NP_001096924; /// NP_001096926;, nucleotide= NM_001103454; /// NM_001103454; /// NM_001103456; /// NM_001103456;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
Interpro : 0005041 // low-density lipoprotein receptor activity // inferred from sequence or structural similarity /// 0005509 // c
FlyMine data for FBgn0261260.
TRiP has 2 RNAi stocks for FBgn0261260 available for purchase.
VDRC has 10 RNAi stocks for FBgn0261260 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain46 ± 54 of 4 9.40Up
Head5 ± 20 of 4 1.10None
Eye12 ± 24 of 4 2.57Up
Thoracicoabdominal ganglion30 ± 14 of 4 6.20Up
Salivary gland57 ± 94 of 411.71Up
Crop45 ± 34 of 4 9.20Up
Midgut9 ± 31 of 4 1.90None
Tubule16 ± 22 of 4 3.30Up
Hindgut48 ± 14 of 4 9.80Up
Heart1 ± 00 of 4 0.25Down
Fat body9 ± 61 of 4 1.94None
Ovary13 ± 04 of 4 2.80Up
Testis10 ± 03 of 4 2.10Up
Male accessory glands66 ± 74 of 413.50Up
Virgin spermatheca23 ± 34 of 4 4.83Up
Mated spermatheca35 ± 103 of 4 7.21None
Adult carcass25 ± 61 of 4 5.10Up
Larval CNS24 ± 34 of 4 5.04Up
Larval Salivary gland15 ± 12 of 4 3.17Up
Larval midgut11 ± 11 of 4 2.42Up
Larval tubule21 ± 13 of 4 4.40Up
Larval hindgut23 ± 54 of 4 4.78Up
Larval fat body6 ± 20 of 4 1.30None
Larval trachea49 ± 44 of 410.12Up
Larval carcass28 ± 34 of 4 5.88Up
S2 cells (growing)11 ± 13 of 4 2.25Up
Whole fly4 ± 00 of 4

Looking for CG15316-RB. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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