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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15326-RA through 18771 annotations produced 1 hits

CG15326 (Ir7b):

Annotation Number : CG15326
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0029965
Gbrowse : chrX:7758622-7760950 (-) // 100.0 //
Probeset : 1640018_at
Accessions : protein= NP_572410;, nucleotide= NM_132182;
FlyMine data for FBgn0029965.
VDRC has 2 RNAi stocks for FBgn0029965 available for purchase.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 00 of 4 0.40None
Head1 10 of 4 1.10None
Eye2 10 of 4 1.33None
Thoracicoabdominal ganglion1 00 of 4 1.10None
Salivary gland8 30 of 4 5.52None
Crop1 00 of 4 0.80None
Midgut1 00 of 4 1.00None
Tubule2 00 of 4 1.90None
Hindgut1 00 of 4 0.70None
Heart3 10 of 4 2.27None
Fat body1 00 of 4 0.83None
Ovary2 10 of 4 1.60None
Testis0 00 of 4 0.40None
Male accessory glands1 00 of 4 1.10None
Virgin spermatheca1 00 of 4 1.13None
Mated spermatheca3 10 of 4 2.07None
Adult carcass1 00 of 4 0.80None
Larval CNS1 00 of 4 0.87None
Larval Salivary gland1 10 of 4 1.28None
Larval midgut1 00 of 4 1.15None
Larval tubule2 00 of 4 1.70None
Larval hindgut2 10 of 4 1.53None
Larval fat body3 10 of 4 2.20None
Larval trachea0 00 of 4 0.52None
Larval carcass3 10 of 4 2.05None
S2 cells (growing)0 00 of 4 0.48None
Whole fly1 00 of 4

Looking for CG15326-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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