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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15327-RA through 18771 annotations produced 1 hits

ionotropic receptor 7d (Ir7d):

Annotation Number : CG15327
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0259190
Gbrowse : chrX:7770995-7778137 (-) // 100.0 //
Probeset : 1636032_at
Accessions : protein= NP_001138175;, nucleotide= NM_001144703;
FlyMine data for FBgn0259190.

TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 11 of 4 1.30None
Head4 10 of 4 1.50None
Eye2 00 of 4 0.85None
Thoracicoabdominal ganglion4 10 of 4 1.50None
Salivary gland9 20 of 4 3.54Up
Crop2 10 of 4 1.00None
Midgut1 00 of 4 0.70None
Tubule3 10 of 4 1.10None
Hindgut2 00 of 4 0.90None
Heart3 10 of 4 1.20None
Fat body3 20 of 4 1.19None
Ovary1 00 of 4 0.60None
Testis2 10 of 4 0.90None
Male accessory glands2 00 of 4 1.00None
Virgin spermatheca2 00 of 4 1.07None
Mated spermatheca4 00 of 4 1.65None
Adult carcass7 21 of 4 2.80None
Larval CNS4 10 of 4 1.55None
Larval Salivary gland5 10 of 4 1.86None
Larval midgut5 10 of 4 2.14None
Larval tubule2 00 of 4 0.80None
Larval hindgut1 00 of 4 0.50None
Larval fat body8 30 of 4 3.10None
Larval trachea1 10 of 4 0.56None
Larval carcass7 20 of 4 2.79None
S2 cells (growing)2 10 of 4 1.03None
Whole fly2 10 of 4

Looking for CG15327-RA. 1 entries matched from 18771, in 2 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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