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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15336-RA through 18771 annotations produced 1 hits



(CG15336):

Annotation Number : CG15336
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030009
Gbrowse : chrX:8041981-8042527 (+) // 100.0 //
Probeset : 1632970_at
Accessions : protein= NP_572450;, nucleotide= NM_132222;
Pathway : 0005622 // intracellular // inferred from electronic annotation
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0030009.
Homophila reports that CG15336 is a close match (7e-11) to human gene STQTL10;ZBTB38 (NP_001073881), a gene associated with {Stature QTL 10}, 612221 (3).
BioGrid reports that CG15336 interacts with CG9426 .
VDRC has 2 RNAi stocks for FBgn0030009 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 ± 00 of 4 0.80None
Head2 ± 00 of 4 1.40None
Eye1 ± 00 of 4 0.57None
Thoracicoabdominal ganglion0 ± 00 of 4 0.50None
Salivary gland8 ± 40 of 4 4.86None
Crop1 ± 00 of 4 0.50None
Midgut1 ± 00 of 4 0.90None
Tubule1 ± 00 of 4 1.00None
Hindgut1 ± 00 of 4 0.60None
Heart1 ± 10 of 4 0.90None
Fat body2 ± 10 of 4 1.16None
Ovary0 ± 00 of 4 0.40None
Testis2 ± 10 of 4 1.60None
Male accessory glands5 ± 10 of 4 3.10None
Virgin spermatheca5 ± 10 of 4 3.07None
Mated spermatheca5 ± 10 of 4 3.11None
Adult carcass1 ± 00 of 4 1.10None
Larval CNS2 ± 10 of 4 1.31None
Larval Salivary gland4 ± 10 of 4 2.60None
Larval midgut67 ± 34 of 438.70Up
Larval tubule3 ± 10 of 4 1.90None
Larval hindgut3 ± 10 of 4 1.73None
Larval fat body1 ± 00 of 4 0.70None
Larval trachea2 ± 20 of 4 1.14None
Larval carcass2 ± 00 of 4 1.70None
S2 cells (growing)1 ± 00 of 4 0.86None
Whole fly1 ± 00 of 4

Looking for CG15336-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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