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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15337-RA through 18771 annotations produced 1 hits



(CG15337):

Annotation Number : CG15337
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030014
Gbrowse : chrX:8054145-8055586 (+) // 100.0 //
Probeset : 1628526_at
Accessions : protein= NP_572455;, nucleotide= NM_132227;
Interpro : 0005515 // protein binding // inferred from physical interaction
FlyMine data for FBgn0030014.
BioGrid reports that CG15337 interacts with CG3062 .
VDRC has 2 RNAi stocks for FBgn0030014 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain0 ± 00 of 4 0.10Down
Head0 ± 00 of 4 0.10Down
Eye1 ± 00 of 4 0.17Down
Thoracicoabdominal ganglion0 ± 00 of 4 0.10Down
Salivary gland12 ± 10 of 4 1.36None
Crop16 ± 13 of 4 1.80Up
Midgut1 ± 00 of 4 0.20Down
Tubule1 ± 00 of 4 0.20Down
Hindgut1 ± 00 of 4 0.10Down
Heart3 ± 00 of 4 0.38Down
Fat body1 ± 00 of 4 0.18Down
Ovary0 ± 00 of 4 0.00Down
Testis128 ± 44 of 414.00Up
Male accessory glands1 ± 00 of 4 0.10Down
Virgin spermatheca1 ± 00 of 4 0.19Down
Mated spermatheca1 ± 00 of 4 0.16Down
Adult carcass3 ± 00 of 4 0.30Down
Larval CNS0 ± 00 of 4 0.05Down
Larval Salivary gland1 ± 00 of 4 0.15Down
Larval midgut1 ± 00 of 4 0.12Down
Larval tubule1 ± 00 of 4 0.20Down
Larval hindgut0 ± 00 of 4 0.10Down
Larval fat body11 ± 81 of 4 1.20None
Larval trachea1 ± 10 of 4 0.15Down
Larval carcass1 ± 00 of 4 0.13Down
S2 cells (growing)0 ± 00 of 4 0.08Down
Whole fly9 ± 12 of 4

Looking for CG15337-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime