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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15349-RA through 18771 annotations produced 1 hits


Chorion protein a at 7F (Cp7Fa):

Annotation Number : CG15349
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0014464
Gbrowse : chrX:8366150-8367001 (+) // 100.0 //
Probeset : 1633465_at
Accessions : protein= NP_001033837; /// NP_001138178;, nucleotide= NM_001038748; /// NM_001144706;
FlyMine data for FBgn0014464.
VDRC has 4 RNAi stocks for FBgn0014464 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 04 of 4 0.00Down
Head6 ± 10 of 4 0.00Down
Eye5 ± 21 of 4 0.02Down
Thoracicoabdominal ganglion9 ± 01 of 4 0.00Down
Salivary gland9 ± 40 of 4 0.03Down
Crop5 ± 20 of 4 0.00Down
Midgut1 ± 00 of 4 0.00Down
Tubule1 ± 00 of 4 0.00Down
Hindgut6 ± 20 of 4 0.00Down
Heart5 ± 11 of 4 0.02Down
Fat body13 ± 52 of 4 0.04Down
Ovary881 ± 1004 of 4 2.80Up
Testis4 ± 10 of 4 0.00Down
Male accessory glands3 ± 21 of 4 0.00Down
Virgin spermatheca12 ± 33 of 4 0.04Down
Mated spermatheca9 ± 22 of 4 0.03Down
Adult carcass9 ± 30 of 4 0.00Down
Larval CNS4 ± 30 of 4 0.01Down
Larval Salivary gland2 ± 00 of 4 0.01Down
Larval midgut0 ± 00 of 4 0.00Down
Larval tubule3 ± 10 of 4 0.00Down
Larval hindgut2 ± 10 of 4 0.01Down
Larval fat body6 ± 20 of 4 0.00Down
Larval trachea0 ± 00 of 4 0.00Down
Larval carcass1 ± 00 of 4 0.00Down
S2 cells (growing)1 ± 00 of 4 0.01Down
Whole fly320 ± 564 of 4

Looking for CG15349-RA. 1 entries matched from 18771, in 1 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime