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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15354-RA through 18771 annotations produced 1 hits



(CG33543):

Annotation Number : CG15354
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053543
Gbrowse : chr2L:2000245-2002960 (-) // 100.0 //
Probeset : 1623163_at
Accessions : protein= NP_001014458;, nucleotide= NM_001014458;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity
FlyMine data for FBgn0053543.
VDRC has 5 RNAi stocks for FBgn0053543 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 01 of 4 1.50None
Head4 ± 10 of 4 1.50None
Eye2 ± 00 of 4 0.98None
Thoracicoabdominal ganglion3 ± 11 of 4 1.10None
Salivary gland9 ± 00 of 4 3.27Up
Crop3 ± 20 of 4 1.30None
Midgut5 ± 30 of 4 1.90None
Tubule3 ± 00 of 4 1.40Up
Hindgut5 ± 00 of 4 2.00None
Heart0 ± 00 of 4 0.18None
Fat body4 ± 20 of 4 1.72None
Ovary2 ± 01 of 4 1.00None
Testis3 ± 10 of 4 1.40None
Male accessory glands3 ± 10 of 4 1.30None
Virgin spermatheca1 ± 00 of 4 0.46None
Mated spermatheca2 ± 00 of 4 0.92None
Adult carcass5 ± 10 of 4 1.90None
Larval CNS3 ± 11 of 4 1.38None
Larval Salivary gland1 ± 00 of 4 0.44None
Larval midgut5 ± 10 of 4 2.07None
Larval tubule3 ± 10 of 4 1.20None
Larval hindgut3 ± 00 of 4 1.10None
Larval fat body2 ± 00 of 4 0.90None
Larval trachea1 ± 10 of 4 0.59None
Larval carcass7 ± 01 of 4 2.52Up
S2 cells (growing)3 ± 11 of 4 1.27None
Whole fly2 ± 10 of 4

Looking for CG15354-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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