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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)

Searching for CG15358-RA through 18771 annotations produced 1 hits


(CG15358):

Annotation Number : CG15358
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031373
Gbrowse : chr2L:1882414-1884056 (-) // 100.0 //
Probeset : 1628020_at
Accessions : protein= NP_608629;, nucleotide= NM_134785;
Interpro : 0005488 // binding // inferred from electronic annotation
FlyMine data for FBgn0031373.
Homophila reports that CG15358 is a close match (7e-11) to human gene CD209;CDSIGN (NP_066978), a gene associated with {Dengue fever, protection against} (3);{HIV type 1, susceptibility to}, 609423 (3);{Mycobacterium tuberculosis, susceptibility to}, 607948 (3).
TRiP has 1 RNAi stocks for FBgn0031373 available for purchase.
VDRC has 3 RNAi stocks for FBgn0031373 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain4 ± 00 of 4 0.10Down
Head5 ± 10 of 4 0.10Down
Eye5 ± 10 of 4 0.08Down
Thoracicoabdominal ganglion8 ± 31 of 4 0.10Down
Salivary gland11 ± 30 of 4 0.14Down
Crop6 ± 10 of 4 0.10Down
Midgut8 ± 10 of 4 0.10Down
Tubule10 ± 11 of 4 0.10Down
Hindgut9 ± 20 of 4 0.10Down
Heart1006 ± 654 of 412.85Up
Fat body877 ± 444 of 411.20Up
Ovary2 ± 00 of 4 0.00Down
Testis4 ± 11 of 4 0.10Down
Male accessory glands5 ± 20 of 4 0.10Down
Virgin spermatheca4 ± 10 of 4 0.06Down
Mated spermatheca4 ± 20 of 4 0.06Down
Adult carcass679 ± 274 of 4 8.70Up
Larval CNS2 ± 10 of 4 0.03Down
Larval Salivary gland8 ± 30 of 4 0.11Down
Larval midgut9 ± 10 of 4 0.12Down
Larval tubule8 ± 02 of 4 0.10Down
Larval hindgut8 ± 00 of 4 0.11Down
Larval fat body11 ± 30 of 4 0.20Down
Larval trachea5 ± 30 of 4 0.08Down
Larval carcass56 ± 104 of 4 0.72None
S2 cells (growing)6 ± 00 of 4 0.08Down
Whole fly78 ± 154 of 4

Looking for CG15358-RA. 1 entries matched from 18771, in 0 s.

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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