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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15362-RA through 18771 annotations produced 1 hits



(CG15362):

Annotation Number : CG15362
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031378
Gbrowse : chr2L:1981309-1981927 (+) // 100.0 //
Probeset : 1639111_at
Accessions : protein= NP_608634;, nucleotide= NM_134790;
Interpro : 0003824 // catalytic activity // inferred from electronic annotation
FlyMine data for FBgn0031378.
VDRC has 2 RNAi stocks for FBgn0031378 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain22 ± 14 of 4 0.20Down
Head36 ± 14 of 4 0.30Down
Eye39 ± 34 of 4 0.31Down
Thoracicoabdominal ganglion31 ± 04 of 4 0.20Down
Salivary gland182 ± 134 of 4 1.45Up
Crop92 ± 34 of 4 0.70Down
Midgut63 ± 14 of 4 0.50Down
Tubule43 ± 14 of 4 0.30Down
Hindgut58 ± 44 of 4 0.50Down
Heart80 ± 34 of 4 0.64Down
Fat body66 ± 64 of 4 0.53Down
Ovary199 ± 44 of 4 1.60Up
Testis545 ± 124 of 4 4.30Up
Male accessory glands126 ± 94 of 4 1.00None
Virgin spermatheca36 ± 14 of 4 0.29Down
Mated spermatheca45 ± 34 of 4 0.36Down
Adult carcass62 ± 34 of 4 0.50Down
Larval CNS33 ± 44 of 4 0.27Down
Larval Salivary gland149 ± 44 of 4 1.19None
Larval midgut37 ± 24 of 4 0.30Down
Larval tubule68 ± 34 of 4 0.50Down
Larval hindgut51 ± 14 of 4 0.41Down
Larval fat body113 ± 184 of 4 0.90None
Larval trachea95 ± 34 of 4 0.76Down
Larval carcass48 ± 34 of 4 0.39Down
S2 cells (growing)158 ± 54 of 4 1.26Up
Whole fly125 ± 74 of 4

Looking for CG15362-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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