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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15365-RA through 18771 annotations produced 1 hits



(CG15365):

Annotation Number : CG15365
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030077
Gbrowse : chrX:8949079-8952099 (-) // 100.0 //
Probeset : 1638490_at
Accessions : protein= NP_572516;, nucleotide= NM_132288;
Pathway : 0005737 // cytoplasm // inferred from electronic annotation /// 0016020 // membrane // inferred from electronic annotati
FlyMine data for FBgn0030077.
BioGrid reports that CG15365 interacts with CG15483 CG2061 CG32772 CG4697 CG5149 CG6147 CG7387 CG8346 CG8440 CG8609 CG33519 .
TRiP has 1 RNAi stocks for FBgn0030077 available for purchase.
VDRC has 2 RNAi stocks for FBgn0030077 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain8 10 of 4 1.00None
Head10 20 of 4 1.30None
Eye10 10 of 4 1.27None
Thoracicoabdominal ganglion4 20 of 4 0.50None
Salivary gland11 50 of 4 1.39None
Crop34 34 of 4 4.20Up
Midgut18 50 of 4 2.30None
Tubule3 00 of 4 0.40Down
Hindgut23 14 of 4 2.80Up
Heart2 00 of 4 0.26None
Fat body6 50 of 4 0.77None
Ovary6 10 of 4 0.80None
Testis5 10 of 4 0.70None
Male accessory glands9 20 of 4 1.20None
Virgin spermatheca11 10 of 4 1.43None
Mated spermatheca10 20 of 4 1.20None
Adult carcass10 00 of 4 1.20None
Larval CNS9 00 of 4 1.11None
Larval Salivary gland13 30 of 4 1.65None
Larval midgut2 10 of 4 0.30None
Larval tubule4 20 of 4 0.50None
Larval hindgut18 20 of 4 2.23Up
Larval fat body9 40 of 4 1.10None
Larval trachea27 24 of 4 3.28Up
Larval carcass14 10 of 4 1.79None
S2 cells (growing)2 00 of 4 0.27None
Whole fly8 20 of 4

Looking for CG15365-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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