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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15373-RA through 18771 annotations produced 1 hits



(CG15373):

Annotation Number : CG15373
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0030889
Gbrowse : chrX:17938103-17942663 (+) // 100.0 //
Probeset : 1629134_at
Accessions : protein= NP_001097013; /// NP_573264;, nucleotide= NM_001103543; /// NM_133036;
FlyMine data for FBgn0030889.
VDRC has 2 RNAi stocks for FBgn0030889 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain2 ± 00 of 4 0.30None
Head4 ± 10 of 4 0.60None
Eye1 ± 00 of 4 0.13None
Thoracicoabdominal ganglion3 ± 10 of 4 0.40None
Salivary gland8 ± 20 of 4 1.01None
Crop4 ± 20 of 4 0.50None
Midgut14 ± 10 of 4 1.70None
Tubule3 ± 00 of 4 0.40Down
Hindgut3 ± 10 of 4 0.50None
Heart3 ± 00 of 4 0.38None
Fat body9 ± 40 of 4 1.19None
Ovary3 ± 10 of 4 0.40None
Testis13 ± 24 of 4 1.70None
Male accessory glands10 ± 00 of 4 1.30None
Virgin spermatheca2 ± 10 of 4 0.27None
Mated spermatheca4 ± 10 of 4 0.57None
Adult carcass13 ± 20 of 4 1.60None
Larval CNS4 ± 11 of 4 0.52None
Larval Salivary gland12 ± 21 of 4 1.45None
Larval midgut5 ± 10 of 4 0.71None
Larval tubule2 ± 00 of 4 0.30None
Larval hindgut5 ± 00 of 4 0.64None
Larval fat body10 ± 20 of 4 1.30None
Larval trachea2 ± 10 of 4 0.34None
Larval carcass5 ± 10 of 4 0.68None
S2 cells (growing)4 ± 10 of 4 0.53None
Whole fly8 ± 31 of 4

Looking for CG15373-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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