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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15389-RA through 18771 annotations produced 1 hits



eyes shut (eys):

Annotation Number : CG15389
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031414
Gbrowse : chr2L:2346407-2347183 (+) // 100.0 //
Probeset : 1627703_at
Accessions : protein= NP_001027571;, nucleotide= NM_001032399;
Pathway : 0005576 // extracellular region // inferred from electronic annotation /// 0005615 // extracellular space // inferred fr
Interpro : 0005509 // calcium ion binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from ph
FlyMine data for FBgn0031414.
TRiP has 4 RNAi stocks for FBgn0031414 available for purchase.
VDRC has 9 RNAi stocks for FBgn0031414 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain3 ± 10 of 4 1.30None
Head3 ± 10 of 4 1.30None
Eye2 ± 10 of 4 1.01None
Thoracicoabdominal ganglion4 ± 10 of 4 1.90None
Salivary gland7 ± 10 of 4 3.21Up
Crop1 ± 00 of 4 0.50None
Midgut2 ± 00 of 4 1.00None
Tubule2 ± 00 of 4 0.80None
Hindgut1 ± 00 of 4 0.50None
Heart3 ± 00 of 4 1.42None
Fat body1 ± 10 of 4 0.67None
Ovary0 ± 00 of 4 0.30None
Testis1 ± 00 of 4 0.50None
Male accessory glands2 ± 00 of 4 1.00None
Virgin spermatheca3 ± 10 of 4 1.33None
Mated spermatheca2 ± 10 of 4 1.21None
Adult carcass2 ± 00 of 4 0.90None
Larval CNS0 ± 00 of 4 0.33None
Larval Salivary gland2 ± 10 of 4 1.25None
Larval midgut5 ± 20 of 4 2.36None
Larval tubule1 ± 00 of 4 0.60None
Larval hindgut1 ± 00 of 4 0.57None
Larval fat body2 ± 10 of 4 1.30None
Larval trachea2 ± 10 of 4 0.87None
Larval carcass2 ± 00 of 4 1.18None
S2 cells (growing)1 ± 00 of 4 0.50None
Whole fly2 ± 00 of 4

Looking for CG15389-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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