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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15407-RA through 18771 annotations produced 1 hits



(CG33282):

Annotation Number : CG15407
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0053282
Gbrowse : chr2L:3324242-3329625 (+) // 100.0 //
Probeset : 1625342_at
Accessions : protein= NP_001097067;, nucleotide= NM_001103597;
Pathway : 0016020 // membrane // inferred from sequence or structural similarity /// 0016020 // membrane // inferred from electron
Interpro : 0005215 // transporter activity // inferred from electronic annotation /// 0015145 // monosaccharide transmembrane trans
FlyMine data for FBgn0053282.
VDRC has 2 RNAi stocks for FBgn0053282 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain1 00 of 4 0.10Down
Head1 00 of 4 0.10Down
Eye1 00 of 4 0.12Down
Thoracicoabdominal ganglion2 10 of 4 0.20Down
Salivary gland14 70 of 4 1.36None
Crop1 00 of 4 0.10Down
Midgut3 10 of 4 0.30Down
Tubule798 864 of 473.30Up
Hindgut23 24 of 4 2.10Up
Heart3 10 of 4 0.35Down
Fat body11 141 of 4 1.07None
Ovary1 00 of 4 0.20Down
Testis2 00 of 4 0.20Down
Male accessory glands7 30 of 4 0.70None
Virgin spermatheca3 10 of 4 0.28Down
Mated spermatheca3 10 of 4 0.35Down
Adult carcass4 20 of 4 0.40Down
Larval CNS2 20 of 4 0.25Down
Larval Salivary gland3 00 of 4 0.27Down
Larval midgut2 10 of 4 0.22Down
Larval tubule734 694 of 467.40Up
Larval hindgut4 11 of 4 0.40Down
Larval fat body1 00 of 4 0.20Down
Larval trachea1 10 of 4 0.13Down
Larval carcass1 00 of 4 0.14Down
S2 cells (growing)1 00 of 4 0.12Down
Whole fly10 12 of 4

Looking for CG15407-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime