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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15415-RA through 18771 annotations produced 1 hits



CG15415 (Spindly):

Annotation Number : CG15415
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031549
Gbrowse : chr2L:3527552-3530286 (-) // 100.0 //
Probeset : 1623179_at
Accessions : protein= NP_608791;, nucleotide= NM_134947;
Pathway : 0000776 // kinetochore // inferred from direct assay /// 0000776 // kinetochore // traceable author statement /// 000587
Interpro : 0005515 // protein binding // inferred from physical interaction /// 0051010 // microtubule plus-end binding // traceabl
FlyMine data for FBgn0031549.
BioGrid reports that CG15415 interacts with CG5650 CG4863 .
TRiP has 2 RNAi stocks for FBgn0031549 available for purchase.
VDRC has 1 RNAi stocks for FBgn0031549 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 31 of 4 0.40Down
Head7 ± 20 of 4 0.30Down
Eye4 ± 10 of 4 0.15Down
Thoracicoabdominal ganglion12 ± 21 of 4 0.50None
Salivary gland15 ± 41 of 4 0.58None
Crop12 ± 21 of 4 0.50Down
Midgut5 ± 10 of 4 0.20Down
Tubule7 ± 10 of 4 0.30Down
Hindgut9 ± 10 of 4 0.40Down
Heart10 ± 13 of 4 0.42Down
Fat body17 ± 12 of 4 0.65None
Ovary75 ± 24 of 4 2.90Up
Testis26 ± 34 of 4 1.00None
Male accessory glands7 ± 30 of 4 0.30Down
Virgin spermatheca6 ± 00 of 4 0.26Down
Mated spermatheca7 ± 10 of 4 0.27Down
Adult carcass16 ± 50 of 4 0.60None
Larval CNS77 ± 84 of 4 2.98Up
Larval Salivary gland15 ± 12 of 4 0.60None
Larval midgut2 ± 00 of 4 0.09Down
Larval tubule8 ± 10 of 4 0.30Down
Larval hindgut9 ± 12 of 4 0.35Down
Larval fat body13 ± 41 of 4 0.50None
Larval trachea23 ± 44 of 4 0.89None
Larval carcass18 ± 12 of 4 0.70None
S2 cells (growing)66 ± 24 of 4 2.54Up
Whole fly26 ± 44 of 4

Looking for CG15415-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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