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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15427-RD through 18771 annotations produced 3 hits



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4305695 (+) // 99.36 //
Probeset : 1641128_a_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain12 24 of 423.10Up
Head2 10 of 4 3.90None
Eye0 00 of 4 1.18None
Thoracicoabdominal ganglion10 33 of 419.00None
Salivary gland2 10 of 4 5.27None
Crop2 10 of 4 4.70None
Midgut2 00 of 4 4.00None
Tubule2 00 of 4 4.30Up
Hindgut0 00 of 4 1.10None
Heart2 10 of 4 4.64None
Fat body0 00 of 4 1.23None
Ovary0 00 of 4 0.70None
Testis1 10 of 4 2.50None
Male accessory glands1 00 of 4 1.80None
Virgin spermatheca0 00 of 4 1.05None
Mated spermatheca1 00 of 4 2.68None
Adult carcass5 20 of 4 9.30None
Larval CNS1 00 of 4 2.09None
Larval Salivary gland0 00 of 4 1.27None
Larval midgut0 00 of 4 1.23None
Larval tubule0 00 of 4 1.00None
Larval hindgut0 00 of 4 1.05None
Larval fat body2 10 of 4 4.00None
Larval trachea2 20 of 4 4.41None
Larval carcass1 00 of 4 2.68None
S2 cells (growing)0 00 of 4 0.64None
Whole fly0 00 of 4



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4318712 (+) // 100.0 //
Probeset : 1627602_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain31 24 of 4 7.90Up
Head2 10 of 4 0.60None
Eye2 10 of 4 0.54None
Thoracicoabdominal ganglion24 63 of 4 6.30None
Salivary gland6 40 of 4 1.56None
Crop3 10 of 4 0.80None
Midgut1 00 of 4 0.30None
Tubule3 00 of 4 0.90None
Hindgut2 10 of 4 0.50None
Heart0 00 of 4 0.20Down
Fat body3 20 of 4 0.92None
Ovary1 00 of 4 0.40None
Testis1 00 of 4 0.50None
Male accessory glands5 10 of 4 1.30None
Virgin spermatheca4 10 of 4 1.03None
Mated spermatheca1 00 of 4 0.42None
Adult carcass3 10 of 4 0.80None
Larval CNS7 11 of 4 1.77None
Larval Salivary gland1 00 of 4 0.47None
Larval midgut18 20 of 4 4.78Up
Larval tubule1 00 of 4 0.40None
Larval hindgut1 00 of 4 0.35None
Larval fat body2 00 of 4 0.50None
Larval trachea3 30 of 4 0.88None
Larval carcass3 10 of 4 0.97None
S2 cells (growing)2 00 of 4 0.56None
Whole fly4 10 of 4



turtle (tutl):

Annotation Number : CG15427
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0010473
Gbrowse : chr2L:4283150-4318638 (+) // 100.0 //
Probeset : 1636076_a_at
Accessions : protein= NP_001162868; /// NP_001162869; /// NP_524866; /// NP_722967; /// NP_722968; /// NP_722969;, nucleotide= NM_001169397; /// NM_001169398; /// NM_080127; /// NM_164576; /// NM_164577; /// NM_164578;
Pathway : 0016020 // membrane // inferred from electronic annotation /// 0016021 // integral to membrane // inferred from electron
FlyMine data for FBgn0010473.
BDGP gene expression has embryonic in situ data for tutl: 24 pix of staining in 16 body parts.
Homophila reports that CG15427 is a close match (9e-11) to human gene OPCML (NP_001012393), a gene associated with Epithelial ovarian cancer, somatic, 604370 (3).
VDRC has 4 RNAi stocks for FBgn0010473 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain52 34 of 425.50Up
Head5 10 of 4 2.90None
Eye8 22 of 4 4.22Up
Thoracicoabdominal ganglion38 84 of 418.80Up
Salivary gland3 10 of 4 1.90None
Crop1 00 of 4 0.80None
Midgut3 10 of 4 1.80None
Tubule2 10 of 4 1.30None
Hindgut2 00 of 4 1.10None
Heart6 11 of 4 3.22Up
Fat body10 61 of 4 4.87None
Ovary3 00 of 4 1.70None
Testis1 00 of 4 0.50None
Male accessory glands2 00 of 4 1.10None
Virgin spermatheca11 22 of 4 5.41Up
Mated spermatheca10 21 of 4 4.99None
Adult carcass3 10 of 4 1.50None
Larval CNS12 14 of 4 5.99Up
Larval Salivary gland4 10 of 4 2.27None
Larval midgut5 00 of 4 2.77Up
Larval tubule1 00 of 4 0.60None
Larval hindgut3 10 of 4 1.52None
Larval fat body7 20 of 4 3.90None
Larval trachea4 21 of 4 2.38None
Larval carcass3 10 of 4 1.50None
S2 cells (growing)1 00 of 4 0.89None
Whole fly2 00 of 4

Looking for CG15427-RD. 3 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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