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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15431-RA through 18771 annotations produced 1 hits



(CG15431):

Annotation Number : CG15431
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031602
Gbrowse : chr2L:4406128-4409353 (-) // 100.0 //
Probeset : 1633891_at
Accessions : protein= NP_608831;, nucleotide= NM_134987;
FlyMine data for FBgn0031602.
VDRC has 1 RNAi stocks for FBgn0031602 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain23 ± 14 of 4 2.20Up
Head17 ± 11 of 4 1.60None
Eye4 ± 10 of 4 0.44None
Thoracicoabdominal ganglion23 ± 12 of 4 2.20Up
Salivary gland28 ± 81 of 4 2.64None
Crop24 ± 12 of 4 2.30Up
Midgut33 ± 22 of 4 3.10Up
Tubule11 ± 00 of 4 1.00None
Hindgut21 ± 11 of 4 2.00Up
Heart2 ± 00 of 4 0.21Down
Fat body12 ± 50 of 4 1.21None
Ovary3 ± 00 of 4 0.30Down
Testis9 ± 00 of 4 0.90None
Male accessory glands24 ± 41 of 4 2.30None
Virgin spermatheca6 ± 10 of 4 0.56None
Mated spermatheca13 ± 30 of 4 1.25None
Adult carcass20 ± 50 of 4 1.90None
Larval CNS11 ± 22 of 4 1.08None
Larval Salivary gland18 ± 20 of 4 1.77None
Larval midgut22 ± 50 of 4 2.09None
Larval tubule11 ± 31 of 4 1.00None
Larval hindgut12 ± 11 of 4 1.14None
Larval fat body20 ± 40 of 4 1.90None
Larval trachea4 ± 30 of 4 0.43None
Larval carcass7 ± 20 of 4 0.72None
S2 cells (growing)15 ± 00 of 4 1.50None
Whole fly10 ± 20 of 4

Looking for CG15431-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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