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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15436-RA through 18771 annotations produced 1 hits



(CG15436):

Annotation Number : CG15436
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0031610
Gbrowse : chr2L:4463641-4465081 (+) // 100.0 //
Probeset : 1631699_at
Accessions : protein= NP_608840;, nucleotide= NM_134996;
Pathway : 0005622 // intracellular // inferred from electronic annotation /// 0005634 // nucleus // inferred from electronic annot
Interpro : 0003676 // nucleic acid binding // inferred from electronic annotation /// 0005515 // protein binding // inferred from p
FlyMine data for FBgn0031610.
BDGP gene expression has embryonic in situ data for CG15436: 6 pix of staining in 1 body parts.
Homophila reports that CG15436 is a close match (9e-13) to human gene SIP1;SMADIP1;ZEB2;ZFHX1B (NP_055610), a gene associated with Mowat-Wilson syndrome, 235730 (3).
BioGrid reports that CG15436 interacts with CG18764 CG7386 CG8301 CG9928 CG17154 CG17568 CG1856 CG18657 CG2910 CG3032 CG32369 CG4057 CG4360 CG4854 CG5393 CG5683 CG5692 CG6667 CG6677 CG8388 CG9277 .
VDRC has 2 RNAi stocks for FBgn0031610 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain9 ± 13 of 4 0.20Down
Head15 ± 22 of 4 0.30Down
Eye19 ± 24 of 4 0.34Down
Thoracicoabdominal ganglion10 ± 12 of 4 0.20Down
Salivary gland14 ± 50 of 4 0.26Down
Crop25 ± 24 of 4 0.50Down
Midgut11 ± 00 of 4 0.20Down
Tubule5 ± 00 of 4 0.10Down
Hindgut10 ± 22 of 4 0.20Down
Heart32 ± 24 of 4 0.58Down
Fat body36 ± 54 of 4 0.64Down
Ovary137 ± 64 of 4 2.50Up
Testis64 ± 34 of 4 1.20None
Male accessory glands3 ± 10 of 4 0.10Down
Virgin spermatheca16 ± 04 of 4 0.30Down
Mated spermatheca24 ± 04 of 4 0.44Down
Adult carcass19 ± 33 of 4 0.40Down
Larval CNS35 ± 24 of 4 0.63Down
Larval Salivary gland14 ± 11 of 4 0.26Down
Larval midgut2 ± 00 of 4 0.04Down
Larval tubule10 ± 00 of 4 0.20Down
Larval hindgut11 ± 12 of 4 0.20Down
Larval fat body29 ± 94 of 4 0.50None
Larval trachea32 ± 14 of 4 0.58Down
Larval carcass13 ± 23 of 4 0.25Down
S2 cells (growing)51 ± 04 of 4 0.92None
Whole fly56 ± 44 of 4

Looking for CG15436-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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