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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG15438-RA through 18771 annotations produced 1 hits



(CG15438):

Annotation Number : CG15438
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0025684
Gbrowse : chr2L:4446661-4448637 (-) // 100.0 //
Probeset : 1625271_at
Accessions : protein= NP_608835;, nucleotide= NM_134991;
Pathway : 0016021 // integral to membrane // inferred from sequence or structural similarity
Interpro : 0015321 // sodium-dependent phosphate transmembrane transporter activity // inferred from sequence or structural similar
FlyMine data for FBgn0025684.
Homophila reports that CG15438 is a close match (1e-29) to human gene SIASD;SLC17A5;SLD (NP_036566), a gene associated with Salla disease, 604369 (3);Sialic acid storage disorder, infantile, 269920 (3).
TRiP has 1 RNAi stocks for FBgn0025684 available for purchase.
VDRC has 2 RNAi stocks for FBgn0025684 available for purchase.


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain112 ± 44 of 4 1.50Up
Head58 ± 24 of 4 0.80Down
Eye66 ± 44 of 4 0.89None
Thoracicoabdominal ganglion102 ± 54 of 4 1.40Up
Salivary gland223 ± 144 of 4 3.02Up
Crop40 ± 24 of 4 0.60Down
Midgut64 ± 44 of 4 0.90None
Tubule62 ± 64 of 4 0.80None
Hindgut38 ± 04 of 4 0.50Down
Heart48 ± 34 of 4 0.65Down
Fat body40 ± 54 of 4 0.55Down
Ovary139 ± 14 of 4 1.90Up
Testis33 ± 04 of 4 0.50Down
Male accessory glands126 ± 94 of 4 1.70Up
Virgin spermatheca45 ± 54 of 4 0.61Down
Mated spermatheca65 ± 44 of 4 0.88None
Adult carcass43 ± 34 of 4 0.60Down
Larval CNS66 ± 64 of 4 0.89None
Larval Salivary gland1352 ± 1204 of 418.22Up
Larval midgut68 ± 24 of 4 0.92None
Larval tubule69 ± 14 of 4 0.90None
Larval hindgut51 ± 44 of 4 0.70Down
Larval fat body59 ± 94 of 4 0.80None
Larval trachea48 ± 74 of 4 0.65Down
Larval carcass68 ± 54 of 4 0.93None
S2 cells (growing)181 ± 34 of 4 2.45Up
Whole fly74 ± 44 of 4

Looking for CG15438-RA. 1 entries matched from 18771, in 1 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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