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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

String to look for? (e.g. vha, cell adhesion, receptor, aquaporin, adenylate, CG1147, pnt)


Searching for CG1544-RA through 18771 annotations produced 1 hits



(CG1544):

Annotation Number : CG1544
FlyAtlas2 : Click Here for expression data based on RNA-Seq and or miRNA-Seq analyses
Flybase ID : FBgn0039827
Gbrowse : chr3R:27022639-27029450 (+) // 100.0 //
Probeset : 1641199_a_at
Accessions : protein= NP_001097985; /// NP_651849; /// NP_733420;, nucleotide= NM_001104515; /// NM_143592; /// NM_170541;
Pathway : 0005739 // mitochondrion // inferred from electronic annotation /// 0031966 // mitochondrial membrane // inferred from s
Interpro : "0004591 // oxoglutarate dehydrogenase (succinyl-transferring) activity // inferred from sequence or structural similari
FlyMine data for FBgn0039827.
BioGrid reports that CG1544 interacts with CG2985 CG3166 CG3195 .


TissuemRNA SignalPresent CallEnrichmentAffy Call
Brain13 ± 24 of 4 0.40Down
Head82 ± 34 of 4 2.30Up
Eye30 ± 64 of 4 0.85None
Thoracicoabdominal ganglion18 ± 04 of 4 0.50Down
Salivary gland8 ± 20 of 4 0.23Down
Crop7 ± 20 of 4 0.20Down
Midgut11 ± 31 of 4 0.30Down
Tubule563 ± 584 of 415.80Up
Hindgut22 ± 14 of 4 0.60Down
Heart85 ± 34 of 4 2.39Up
Fat body179 ± 324 of 4 5.03Up
Ovary14 ± 14 of 4 0.40Down
Testis10 ± 14 of 4 0.30Down
Male accessory glands1 ± 00 of 4 0.00Down
Virgin spermatheca168 ± 144 of 4 4.74Up
Mated spermatheca108 ± 74 of 4 3.06Up
Adult carcass94 ± 94 of 4 2.70Up
Larval CNS37 ± 34 of 4 1.04None
Larval Salivary gland13 ± 12 of 4 0.39Down
Larval midgut132 ± 114 of 4 3.71Up
Larval tubule355 ± 384 of 410.00Up
Larval hindgut24 ± 24 of 4 0.69Down
Larval fat body454 ± 414 of 412.80Up
Larval trachea6 ± 10 of 4 0.20Down
Larval carcass24 ± 14 of 4 0.68Down
S2 cells (growing)19 ± 14 of 4 0.56Down
Whole fly35 ± 24 of 4

Looking for CG1544-RA. 1 entries matched from 18771, in 2 s.


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime